Os12g0433100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0433100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, RING-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.24 | 0.466 | 3.13 | -0.267 | 0.706 | 0.47 | -1.08 | 0.647 | 0.145 | 4.5 | 74.37 | 1365 | -- | -- |
| 99.12 | 0.464 | 3.12 | -0.169 | 0.693 | 0.493 | -1.13 | -- | 0.169 | 4.56 | 74.51 | 1386 | -- | -- |
| 101.27 | 0.469 | 3.13 | -0.276 | 0.707 | 0.484 | -- | 0.769 | 0.148 | 4.32 | 74.38 | 1345 | -- | -- |
| 102.45 | 0.471 | 3.12 | -0.162 | 0.68 | 0.507 | -- | -- | 0.178 | 4.46 | 74.07 | 1395 | -- | -- |
| 118.99 | 0.508 | 3.17 | -0.239 | -- | 0.678 | -- | 0.808 | 0.0443 | -- | 75.96 | 1891 | -- | -- |
| 106.95 | 0.485 | 3.14 | -0.245 | 0.663 | -- | -1.21 | -- | 0.104 | 4.6 | -- | -- | -- | -- |
| 110.85 | 0.493 | 3.13 | -0.238 | 0.654 | -- | -- | -- | 0.11 | 4.51 | -- | -- | -- | -- |
| 115.43 | 0.5 | 3.12 | -0.135 | -- | 0.832 | -- | -- | 0.198 | -- | 75.53 | 1891 | -- | -- |
| 103.13 | 0.473 | 3.12 | -- | 0.676 | 0.526 | -- | -- | 0.197 | 4.48 | 74.04 | 1400 | -- | -- |
| 133.7 | 0.54 | 3.14 | -0.213 | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
| 112.34 | 0.496 | 3.13 | -- | 0.65 | -- | -- | -- | 0.136 | 4.52 | -- | -- | -- | -- |
| 115.91 | 0.501 | 3.12 | -- | -- | 0.845 | -- | -- | 0.213 | -- | 75.57 | 1891 | -- | -- |
| 134.89 | 0.542 | 3.13 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.81 | wind | 9.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 2 | 94.01 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 3 | 94.03 | wind | 9.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 13 | 94.69 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 10 | 3 |
| 21 | 95.31 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 26 | 95.44 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 7 | 6 |
| 30 | 95.51 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 41 | 95.72 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 49 | 95.81 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 56 | 95.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 57 | 95.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 58 | 95.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 60 | 95.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 89 | 96.17 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 98 | 96.27 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 102 | 96.37 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 103 | 96.40 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 124 | 96.53 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 130 | 96.55 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 10 |
| 146 | 96.62 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 196 | 96.89 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 219 | 97.05 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 220 | 97.05 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 3 |
| 230 | 97.10 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 233 | 97.11 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 234 | 97.12 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 235 | 97.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 253 | 97.17 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 278 | 97.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 283 | 97.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 291 | 97.24 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 351 | 97.37 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 14 |
| 419 | 97.50 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 421 | 97.50 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 436 | 97.53 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 439 | 97.53 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 9 | 8 |
| 487 | 97.58 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 9 | 8 |
| 515 | 97.64 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 581 | 97.70 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 600 | 97.74 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 650 | 97.83 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 11 |
| 653 | 97.83 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 11 |
| 657 | 97.84 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 11 |
| 682 | 97.87 | wind | 9.0 | 4320 | < th | dose independent | rect. | 22 | 15 |
| 708 | 97.90 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 21 | 7 |
| 719 | 97.91 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 741 | 97.94 | wind | 9.0 | 4320 | < th | dose independent | rect. | 1 | 12 |
| 749 | 97.96 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 790 | 98.02 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 816 | 98.04 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 874 | 98.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 879 | 98.13 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 884 | 98.13 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 922 | 98.17 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 949 | 98.22 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 951 | 98.22 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 10 |