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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0212700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.45 (0.0588) R2 : 0.503
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.53 (0.232) R2dC : 1.08 R2C : 0.24
β3 : -2.16 (0.227) R2dE : 0.265 R2E : -0.573
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.114 (0.125) R2dN8 : 0.000402 R2N8 : -0.00374
σ : 1.1
deviance : 558.63
__
_____
C
peak time of C : 14.2
E
wheather : temperature
threshold : 21.06
memory length : 553
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.77
open length of G : 6.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
539.37 1.09 5.49 -0.0291 4.29 -2.24 0.885 -3.94 0.0207 13.9 21.05 544 3.08 7.85
552.41 1.09 5.43 0.404 4.49 -2.18 -0.77 -- 0.181 14.2 21.09 545 4.65 6.26
533.89 1.08 5.45 0.24 4.76 -2.37 -- -2.75 0.149 14.1 21.1 570 4.72 5.92
554.75 1.1 5.43 0.387 4.56 -2.23 -- -- 0.147 14.1 21 560 4.73 5.95
1108.34 1.56 5.52 -0.128 -- -0.409 -- -0.351 -0.141 -- 21.1 570 4.72 5.92
630.53 1.18 5.51 0.0353 2.91 -- -1.63 -- -0.0995 15.1 -- -- -- --
639.17 1.18 5.52 0.000396 2.91 -- -- -- -0.109 15.1 -- -- -- --
666.12 1.2 5.81 -0.165 -- 2.02 -- -- -0.282 -- 15 801 6.67 3.28
558.63 1.1 5.45 -- 4.53 -2.16 -- -- 0.114 14.2 21.06 553 4.77 6.02
1121.79 1.57 5.53 -0.123 -- -- -- -- -0.185 -- -- -- -- --
639.17 1.18 5.52 -- 2.91 -- -- -- -0.109 15.1 -- -- -- --
615.42 1.16 5.51 -- -- 2.4 -- -- -0.0802 -- 13.2 843 5.92 4.42
1122.19 1.56 5.52 -- -- -- -- -- -0.171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 561.74 atmosphere 1015 270 < th dose dependent rect. 20 19
3 563.46 radiation 1 4320 < th dose dependent rect. 20 1
4 563.92 temperature 20 720 > th dose independent rect. 2 6
7 564.46 temperature 15 270 > th dose dependent rect. 5 10
10 564.67 temperature 25 270 > th dose independent rect. 5 10
12 564.79 wind 1 43200 < th dose dependent rect. 10 1
16 566.16 temperature 30 270 < th dose dependent rect. 4 7
19 566.20 temperature 25 270 < th dose dependent rect. 6 3
21 566.49 atmosphere 1015 90 < th dose dependent rect. 23 18
31 567.65 temperature 30 43200 > th dose dependent rect. 8 2
47 567.84 temperature 30 43200 < th dose independent rect. 7 2
48 567.86 temperature 25 270 < th dose independent rect. 4 8
52 567.96 humidity 60 10 > th dose dependent rect. 18 3
57 568.15 temperature 30 43200 < th dose independent rect. 5 4
58 568.15 temperature 30 43200 < th dose independent rect. 19 14
63 568.32 temperature 30 43200 < th dose independent rect. 1 8
70 568.48 temperature 25 270 < th dose dependent rect. 7 1
76 568.64 temperature 30 43200 < th dose independent rect. 23 10
81 568.82 wind 1 43200 < th dose dependent rect. 9 3
84 568.88 humidity 80 10 > th dose independent rect. 18 3
88 568.93 temperature 25 90 < th dose independent rect. 7 5
90 568.95 temperature 25 270 > th dose independent rect. 23 16
94 569.06 wind 1 43200 < th dose independent rect. 9 4
107 569.51 temperature 30 43200 > th dose independent rect. 8 2
122 569.63 wind 1 43200 > th dose independent rect. 9 5
152 569.80 wind 1 43200 < th dose independent rect. 8 6
162 569.95 temperature 20 720 > th dose independent rect. 5 1
194 571.03 temperature 30 90 < th dose dependent rect. 7 13
231 571.52 temperature 10 270 > th dose dependent rect. 20 19
240 571.68 atmosphere 1000 10 > th dose independent rect. 7 14
312 572.04 temperature 10 720 > th dose dependent rect. 2 6
319 572.08 wind 1 14400 > th dose independent rect. 11 2
350 572.37 temperature 30 43200 > th dose dependent rect. 11 1
357 572.43 atmosphere 1015 270 < th dose dependent rect. 7 8
358 572.43 temperature 10 10 > th dose dependent rect. 21 22
359 572.44 temperature 30 43200 > th dose dependent sin 8 NA
379 572.71 wind 5 90 < th dose independent rect. 19 1
394 572.97 atmosphere 1015 90 < th dose dependent rect. 9 8
395 573.01 wind 7 90 < th dose dependent rect. 19 1
410 573.27 temperature 25 270 > th dose independent sin 4 NA
412 573.31 wind 1 43200 > th dose independent rect. 8 9
479 573.73 atmosphere 1000 90 > th dose independent rect. 19 1
490 573.74 wind 3 43200 < th dose dependent rect. 14 1
499 573.79 temperature 15 270 > th dose dependent sin 4 NA
526 574.07 wind 3 43200 < th dose independent rect. 14 1
548 574.18 temperature 30 43200 > th dose independent sin 9 NA
551 574.21 temperature 30 43200 < th dose independent sin 9 NA
554 574.25 humidity 90 43200 < th dose dependent rect. 22 1
555 574.27 humidity 70 4320 > th dose independent rect. 20 2
559 574.32 wind 1 43200 > th dose independent rect. 8 11
560 574.33 humidity 80 43200 > th dose independent rect. 14 16
577 574.46 temperature 30 10 < th dose dependent rect. 18 3
580 574.47 wind 1 43200 < th dose dependent rect. 4 1
592 574.53 temperature 15 270 > th dose dependent rect. 23 16
594 574.55 wind 1 43200 < th dose independent rect. 8 15
604 574.60 temperature 10 1440 > th dose independent rect. 20 2
607 574.60 temperature 30 1440 < th dose independent rect. 20 2
611 574.60 humidity 50 1440 > th dose independent rect. 20 2
617 574.60 atmosphere 995 1440 > th dose independent rect. 20 2
618 574.60 radiation 1 1440 < th dose independent rect. 20 2
638 574.60 temperature 10 1440 > th dose independent rect. 22 22
652 574.71 humidity 80 43200 > th dose independent sin 15 NA
659 574.75 wind 1 43200 > th dose independent rect. 8 15
665 574.80 temperature 25 43200 > th dose dependent rect. 22 1
690 574.99 temperature 30 90 < th dose independent rect. 18 2
694 575.05 wind 3 43200 > th dose independent rect. 14 1
696 575.06 humidity 80 43200 > th dose independent rect. 15 11
762 575.21 temperature 25 43200 > th dose dependent rect. 21 5
794 575.40 temperature 25 90 < th dose independent rect. 7 13
896 575.82 temperature 25 43200 > th dose dependent rect. 1 1
907 575.91 wind 1 43200 < th dose independent rect. 8 18
918 575.97 temperature 30 43200 > th dose dependent no NA NA