FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0484200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.3 (0.0615) R2 : 0.478
β1 : 2.13 (0.196) R2dD : 0.177 R2D : 0.0402
β2 : 1.68 (0.117) R2dC : 0.247 R2C : 0.29
β3 : 9.02 (1.22) R2dE : 1.09 R2E : -0.638
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 19.4 (3.35) R2dD*E : 0.643 R2D*E : -0.915
γ1 : 0.306 (0.106) R2dN8 : 0.0137 R2N8 : -0.0396
σ : 0.904
deviance : 377.01
__
_____
C
peak time of C : 0.55
E
wheather : radiation
threshold : 0.9098
memory length : 925
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.8
open length of G : 2.98

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
366.65 0.9 4.27 2.23 1.66 8.21 1.71 16 0.329 0.502 0.9516 925 13.8 2.97
440.05 0.985 4.14 1.49 1.86 1.4 1.36 -- 0.175 0.492 1.158 67 14.7 2.44
377.01 0.904 4.3 2.13 1.68 9.02 -- 19.4 0.306 0.55 0.9098 925 13.8 2.98
404.34 0.937 4.12 1.46 1.9 1.96 -- -- 0.204 0.616 3.671 862 14.4 2.17
544.56 1.09 4.27 2.27 -- 9.8 -- 19 0.355 -- 0.8765 832 13.9 3.09
443.14 0.987 4.14 1.45 1.85 -- 1.41 -- 0.163 0.447 -- -- -- --
451.68 0.995 4.15 1.4 1.85 -- -- -- 0.156 0.5 -- -- -- --
417.28 0.951 4.05 1.51 -- 2.49 -- -- 0.454 -- 28.24 834 15 2.66
446.41 0.984 4.15 -- 1.42 1.8 -- -- 0.147 0.82 9.963 848 14.5 2.8
665.6 1.21 4.11 1.46 -- -- -- -- 0.187 -- -- -- -- --
503.29 1.05 4.18 -- 1.87 -- -- -- -8.81e-05 0.538 -- -- -- --
457.68 0.996 4.11 -- -- 2.6 -- -- 0.192 -- 10 757 15.6 3.22
722.08 1.25 4.15 -- -- -- -- -- 0.0244 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 381.49 radiation 1 720 > th dose independent rect. 9 21
2 381.64 radiation 1 720 < th dose dependent rect. 14 3
11 385.55 wind 7 4320 > th dose independent rect. 17 4
13 386.20 wind 7 4320 < th dose independent rect. 17 4
14 386.61 radiation 1 720 > th dose independent rect. 9 10
25 387.20 wind 7 4320 > th dose dependent rect. 17 4
26 387.66 wind 7 4320 > th dose dependent rect. 17 1
39 387.80 wind 7 4320 > th dose independent rect. 17 1
40 388.11 wind 7 4320 > th dose independent rect. 15 6
45 388.82 wind 7 4320 < th dose independent rect. 15 6
47 389.04 humidity 60 720 > th dose dependent rect. 12 13
50 389.12 radiation 1 720 < th dose independent rect. 9 16
52 389.16 radiation 1 720 < th dose independent rect. 21 22
53 389.23 radiation 1 720 < th dose independent rect. 11 14
67 390.05 wind 7 4320 < th dose independent rect. 17 1
76 390.26 humidity 60 720 > th dose dependent rect. 12 16
78 390.30 radiation 10 720 < th dose dependent rect. 14 11
80 390.36 radiation 1 720 < th dose dependent rect. 21 21
122 391.28 humidity 60 720 > th dose dependent sin 16 NA
132 391.50 wind 9 43200 < th dose independent rect. 16 1
154 391.90 humidity 60 720 > th dose dependent rect. 12 21
182 392.33 radiation 1 720 < th dose dependent rect. 9 16
183 392.36 radiation 1 720 < th dose independent rect. 14 3
187 392.40 radiation 1 720 < th dose dependent rect. 11 14
208 392.63 wind 9 43200 > th dose independent rect. 16 1
214 392.74 radiation 1 720 < th dose independent sin 22 NA
241 393.15 humidity 80 720 > th dose independent rect. 12 10
250 393.25 humidity 90 720 < th dose dependent rect. 15 16
252 393.29 radiation 1 720 < th dose independent rect. 11 7
284 393.54 radiation 20 1440 < th dose dependent rect. 11 10
286 393.56 humidity 80 720 < th dose independent rect. 11 10
288 393.56 radiation 20 1440 < th dose dependent rect. 11 16
334 393.80 radiation 1 720 > th dose independent sin 21 NA
340 393.84 humidity 90 720 < th dose dependent sin 14 NA
423 394.48 radiation 1 720 < th dose dependent rect. 5 13
451 394.75 radiation 1 720 < th dose independent rect. 7 12
478 394.94 radiation 1 720 < th dose independent rect. 5 14
499 395.11 humidity 80 720 > th dose independent rect. 12 16
508 395.21 wind 7 4320 > th dose independent sin 16 NA
512 395.23 humidity 80 720 > th dose independent rect. 12 20
591 395.65 humidity 80 1440 < th dose independent rect. 24 15
599 395.72 wind 7 4320 < th dose independent sin 16 NA
608 395.80 humidity 80 720 > th dose independent rect. 12 13
610 395.83 radiation 20 1440 < th dose dependent sin 18 NA
628 395.93 radiation 10 720 > th dose independent sin 16 NA
641 395.96 humidity 90 720 < th dose dependent rect. 15 8
646 396.00 radiation 1 1440 < th dose independent rect. 11 19
655 396.05 humidity 80 720 < th dose independent rect. 11 20
686 396.21 humidity 90 720 < th dose dependent rect. 11 20
719 396.35 radiation 1 14400 > th dose independent rect. 18 11
940 397.15 radiation 10 14400 > th dose independent rect. 10 20
941 397.16 humidity 80 720 > th dose independent sin 18 NA
949 397.19 radiation 10 14400 > th dose independent rect. 10 7
978 397.20 radiation 10 14400 > th dose independent rect. 14 2