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Os02g0686100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING-H2 finger protein ATL1B.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.53 (0.0482) R2 : 0.456
β1 : 1.9 (0.183) R2dD : 0.189 R2D : 0.227
β2 : 0.647 (0.107) R2dC : 0.0443 R2C : 0.0277
β3 : -5.19 (0.445) R2dE : 0.582 R2E : -0.0393
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.6 (1.31) R2dD*E : 0.397 R2D*E : -0.632
γ1 : -0.59 (0.0959) R2dN8 : 0.0699 R2N8 : 0.036
σ : 0.788
deviance : 286
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_____
C
peak time of C : 8.33
E
wheather : radiation
threshold : 1.064
memory length : 1495
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.15
open length of G : 12.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
284.93 0.793 7.53 1.87 0.637 -5.25 0.606 -11.7 -0.601 8.48 1.041 1494 4.18 12.8
332.86 0.85 7.74 1.24 0.545 -2.49 0.342 -- -0.84 10.1 2.017 1568 5.32 11.9
286 0.788 7.53 1.9 0.647 -5.19 -- -11.6 -0.59 8.33 1.064 1495 4.15 12.8
327.89 0.843 7.74 1.39 0.531 -1.99 -- -- -0.763 8.92 2.28 1524 5.25 12.1
307.46 0.817 7.55 1.91 -- -5.16 -- -11.5 -0.59 -- 1.085 1483 4.22 12.8
369.72 0.901 7.68 1.95 0.54 -- 0.4 -- -0.463 8.97 -- -- -- --
370.26 0.901 7.68 1.96 0.54 -- -- -- -0.463 8.89 -- -- -- --
344.38 0.864 7.74 1.39 -- -2.11 -- -- -0.756 -- 2.28 1525 4.97 12.1
328.61 0.844 7.7 -- 0.578 -1.84 -- -- -0.796 9.29 1.01 33106 6.43 11
386.93 0.919 7.69 1.96 -- -- -- -- -0.459 -- -- -- -- --
471.63 1.02 7.73 -- 0.545 -- -- -- -0.681 8.62 -- -- -- --
343.01 0.863 7.73 -- -- -1.95 -- -- -0.986 -- 0.4365 33071 5.35 12.3
488.38 1.03 7.74 -- -- -- -- -- -0.677 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 284.12 humidity 80.0 14400 > th dose independent rect. 15 1
3 289.06 precipitation 0.1 14400 > th dose dependent rect. 5 1
4 289.77 humidity 80.0 14400 < th dose independent rect. 15 1
5 289.81 precipitation 0.1 14400 > th dose independent rect. 5 1
7 290.96 precipitation 0.1 14400 < th dose independent rect. 5 1
8 290.96 precipitation 0.1 14400 < th dose dependent rect. 5 1
11 292.37 precipitation 0.1 43200 > th dose dependent rect. 19 1
13 293.71 precipitation 0.1 14400 > th dose independent rect. 17 1
14 293.87 precipitation 0.1 14400 < th dose independent rect. 17 1
15 293.87 precipitation 0.1 14400 < th dose dependent rect. 17 1
18 294.96 precipitation 0.1 14400 > th dose dependent rect. 4 4
20 295.34 radiation 1.0 1440 < th dose dependent rect. 4 13
21 295.36 radiation 1.0 1440 < th dose dependent rect. 2 15
25 295.50 humidity 80.0 14400 > th dose dependent rect. 14 1
27 295.62 radiation 1.0 1440 < th dose dependent rect. 22 19
28 295.62 radiation 1.0 1440 < th dose dependent rect. 19 22
33 295.91 precipitation 0.1 14400 > th dose independent rect. 4 4
39 296.50 precipitation 0.1 14400 > th dose dependent rect. 17 1
41 296.74 precipitation 0.1 14400 < th dose independent rect. 4 4
42 296.74 precipitation 0.1 14400 < th dose dependent rect. 4 4
51 297.42 precipitation 0.1 43200 < th dose independent rect. 19 1
52 297.42 precipitation 0.1 43200 < th dose dependent rect. 19 1
53 297.43 precipitation 0.1 43200 > th dose independent rect. 19 1
56 298.11 radiation 1.0 1440 < th dose independent rect. 5 12
60 298.31 radiation 1.0 1440 > th dose independent rect. 5 12
61 298.31 radiation 1.0 1440 < th dose independent rect. 2 15
65 298.43 radiation 1.0 1440 < th dose independent rect. 22 19
66 298.45 radiation 1.0 1440 < th dose independent rect. 19 22
99 300.73 precipitation 0.1 4320 > th dose dependent rect. 5 9
100 300.81 wind 1.0 43200 < th dose independent rect. 19 9
103 301.00 precipitation 0.1 4320 > th dose dependent rect. 5 11
109 301.46 radiation 1.0 14400 > th dose independent rect. 7 4
110 301.57 wind 9.0 14400 > th dose dependent rect. 10 1
116 301.91 radiation 1.0 14400 < th dose independent rect. 7 4
117 301.96 wind 1.0 43200 > th dose independent rect. 19 10
119 302.04 humidity 70.0 14400 < th dose independent rect. 18 1
123 302.24 precipitation 0.1 4320 > th dose dependent rect. 8 8
138 302.71 precipitation 0.1 14400 > th dose dependent rect. 13 3
146 303.02 radiation 1.0 14400 < th dose dependent rect. 7 3
149 303.13 precipitation 0.1 4320 > th dose independent rect. 5 9
150 303.19 precipitation 0.1 14400 < th dose independent rect. 13 3
151 303.19 precipitation 0.1 14400 < th dose dependent rect. 13 3
155 303.25 precipitation 0.1 4320 > th dose independent rect. 7 7
157 303.34 precipitation 0.1 4320 > th dose dependent rect. 19 22
159 303.39 wind 1.0 43200 < th dose dependent rect. 19 10
163 303.50 precipitation 0.1 14400 > th dose independent rect. 13 3
164 303.52 radiation 1.0 1440 < th dose dependent sin 2 NA
166 303.56 humidity 70.0 14400 < th dose independent rect. 16 5
167 303.57 humidity 70.0 14400 < th dose independent rect. 16 16
183 303.69 precipitation 0.1 4320 < th dose independent rect. 7 7
184 303.69 precipitation 0.1 4320 < th dose dependent rect. 7 7
186 303.74 precipitation 0.1 4320 < th dose independent rect. 5 9
187 303.74 precipitation 0.1 4320 < th dose dependent rect. 5 9
202 304.26 radiation 1.0 1440 > th dose independent sin 2 NA
206 304.29 humidity 70.0 14400 > th dose independent rect. 16 16
214 304.39 precipitation 0.1 14400 > th dose dependent rect. 13 1
221 304.48 radiation 1.0 1440 < th dose independent sin 2 NA
231 304.68 precipitation 0.1 14400 > th dose independent rect. 13 1
235 304.73 humidity 70.0 14400 < th dose dependent rect. 16 1
248 304.80 precipitation 0.1 4320 < th dose independent rect. 18 23
249 304.80 precipitation 0.1 4320 < th dose dependent rect. 18 23
250 304.81 precipitation 0.1 4320 > th dose independent rect. 18 23
254 304.86 humidity 70.0 14400 < th dose independent sin 13 NA
256 304.87 humidity 70.0 14400 > th dose independent rect. 16 5
258 304.90 humidity 70.0 14400 > th dose independent rect. 17 3
262 304.93 radiation 1.0 14400 < th dose dependent rect. 19 10
270 304.98 precipitation 0.1 14400 < th dose independent rect. 13 1
273 304.98 humidity 70.0 14400 > th dose independent rect. 16 13
275 304.98 precipitation 0.1 14400 < th dose dependent rect. 13 1
289 305.07 wind 9.0 14400 < th dose independent rect. 7 4
332 305.63 wind 9.0 14400 > th dose dependent rect. 6 5
344 305.66 wind 1.0 43200 < th dose dependent rect. 16 13
349 305.77 temperature 30.0 14400 < th dose dependent rect. 13 1
352 305.86 humidity 70.0 14400 > th dose independent sin 13 NA
368 305.98 precipitation 0.1 4320 > th dose independent rect. 11 5
370 305.99 humidity 70.0 14400 > th dose independent rect. 18 1
374 306.05 humidity 90.0 1440 > th dose independent rect. 5 15
384 306.12 wind 3.0 43200 < th dose dependent rect. 24 4
392 306.24 humidity 90.0 720 < th dose independent rect. 5 19
400 306.30 humidity 80.0 1440 > th dose dependent rect. 5 12
428 306.49 precipitation 0.1 4320 < th dose independent rect. 10 7
437 306.49 precipitation 0.1 4320 < th dose dependent rect. 10 7
442 306.56 radiation 20.0 14400 > th dose dependent rect. 16 1
457 306.64 precipitation 0.1 4320 > th dose independent rect. 10 7
521 307.01 wind 9.0 14400 < th dose independent rect. 10 1
555 307.20 precipitation 0.1 4320 > th dose dependent rect. 21 20
560 307.22 humidity 80.0 14400 < th dose dependent rect. 15 6
571 307.29 wind 9.0 14400 > th dose independent rect. 6 5
588 307.45 humidity 80.0 1440 > th dose dependent sin 1 NA
630 307.81 humidity 70.0 14400 < th dose independent rect. 11 21
635 307.84 temperature 25.0 14400 > th dose dependent rect. 13 1
636 307.84 radiation 40.0 4320 < th dose dependent rect. 18 6
637 307.85 humidity 90.0 14400 < th dose dependent rect. 15 1
642 307.89 humidity 90.0 720 > th dose independent rect. 5 19
644 307.89 humidity 90.0 720 > th dose dependent rect. 7 17
661 307.98 humidity 90.0 14400 > th dose independent rect. 13 19
662 307.99 humidity 90.0 14400 > th dose independent rect. 15 17
666 308.00 humidity 50.0 14400 > th dose dependent rect. 19 1
668 308.00 humidity 70.0 14400 < th dose dependent rect. 15 16
679 308.02 humidity 90.0 1440 < th dose independent rect. 5 12
695 308.10 humidity 80.0 1440 > th dose dependent rect. 2 17
723 308.21 humidity 90.0 14400 > th dose independent rect. 13 15
725 308.22 atmosphere 1005.0 43200 > th dose independent rect. 2 1
726 308.22 humidity 90.0 14400 > th dose independent rect. 15 13
731 308.26 precipitation 0.1 4320 > th dose dependent rect. 2 15
751 308.32 precipitation 0.1 4320 > th dose dependent rect. 24 17
791 308.50 humidity 70.0 14400 < th dose independent rect. 11 11
839 308.67 humidity 90.0 14400 < th dose dependent rect. 19 1
863 308.76 humidity 70.0 14400 > th dose independent rect. 11 21
903 308.95 precipitation 0.1 4320 > th dose dependent rect. 18 9
911 308.99 humidity 90.0 14400 > th dose independent sin 14 NA
920 309.02 radiation 1.0 720 > th dose independent rect. 8 23
934 309.06 precipitation 0.1 4320 < th dose independent rect. 24 17
936 309.06 precipitation 0.1 4320 < th dose dependent rect. 24 17
947 309.11 humidity 90.0 14400 > th dose independent rect. 1 20
952 309.13 humidity 50.0 14400 > th dose dependent rect. 15 6
968 309.15 precipitation 0.1 4320 > th dose dependent rect. 18 13
977 309.20 wind 3.0 43200 < th dose independent rect. 6 3
982 309.21 humidity 90.0 14400 > th dose independent rect. 9 23
987 309.25 humidity 80.0 720 > th dose dependent rect. 3 21
991 309.27 precipitation 0.1 4320 > th dose dependent rect. 19 2
996 309.29 temperature 20.0 14400 > th dose independent rect. 18 1