Os02g0692000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING finger family protein.
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Os02g0692000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING finger family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.9 | 0.627 | 7.52 | -2.24 | 2.53 | 1.16 | 1.16 | -1.99 | -0.313 | 7.12 | 79.4 | 1237 | -- | -- |
| 181.91 | 0.628 | 7.5 | -2.09 | 2.65 | 1.08 | 1.29 | -- | -0.292 | 7.22 | 77.94 | 1065 | -- | -- |
| 181.42 | 0.627 | 7.53 | -2.23 | 2.55 | 1.18 | -- | -2.04 | -0.318 | 7.12 | 79.87 | 1218 | -- | -- |
| 186.54 | 0.636 | 7.49 | -2.05 | 2.62 | 1.04 | -- | -- | -0.279 | 7.17 | 77.83 | 1099 | -- | -- |
| 510.94 | 1.05 | 7.58 | -2.15 | -- | 1.29 | -- | -2.12 | -0.322 | -- | 88.4 | 1344 | -- | -- |
| 204.77 | 0.671 | 7.51 | -1.9 | 2.54 | -- | 1.16 | -- | -0.325 | 6.86 | -- | -- | -- | -- |
| 208.21 | 0.676 | 7.51 | -1.88 | 2.54 | -- | -- | -- | -0.328 | 6.83 | -- | -- | -- | -- |
| 517.12 | 1.06 | 7.56 | -1.95 | -- | 1.1 | -- | -- | -0.282 | -- | 88 | 1348 | -- | -- |
| 288.33 | 0.791 | 7.47 | -- | 2.53 | 0.84 | -- | -- | -0.144 | 7.15 | 105.7 | 1199 | -- | -- |
| 547.23 | 1.09 | 7.56 | -1.82 | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
| 301.07 | 0.812 | 7.46 | -- | 2.52 | -- | -- | -- | -0.119 | 6.88 | -- | -- | -- | -- |
| 614.74 | 1.15 | 7.52 | -- | -- | 0.925 | -- | -- | -0.108 | -- | 108.3 | 1349 | -- | -- |
| 634.74 | 1.18 | 7.52 | -- | -- | -- | -- | -- | -0.077 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.26 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 26 | 176.95 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 29 | 177.19 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 32 | 177.40 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 11 |
| 35 | 177.44 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 76 | 178.29 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 87 | 178.42 | humidity | 80 | 270 | > th | dose independent | rect. | 5 | 14 |
| 100 | 178.55 | humidity | 70 | 10 | > th | dose dependent | sin | 20 | NA |
| 103 | 178.57 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 124 | 178.75 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 11 |
| 135 | 178.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 137 | 178.87 | humidity | 80 | 30 | > th | dose independent | rect. | 7 | 13 |
| 152 | 179.02 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 3 |
| 158 | 179.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 164 | 179.07 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 192 | 179.19 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 5 |
| 193 | 179.19 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 199 | 179.22 | humidity | 70 | 90 | > th | dose dependent | sin | 21 | NA |
| 204 | 179.24 | radiation | 10 | 1440 | > th | dose independent | sin | 18 | NA |
| 237 | 179.34 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 242 | 179.36 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 245 | 179.37 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 246 | 179.38 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 19 |
| 261 | 179.43 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 276 | 179.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 315 | 179.61 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 318 | 179.63 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 343 | 179.69 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 345 | 179.69 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 364 | 179.71 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 369 | 179.72 | humidity | 70 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 375 | 179.73 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 388 | 179.77 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 392 | 179.78 | humidity | 70 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 416 | 179.83 | humidity | 60 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 435 | 179.86 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 471 | 179.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 567 | 180.06 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 639 | 180.17 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 644 | 180.18 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 708 | 180.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 725 | 180.40 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 759 | 180.50 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 783 | 180.56 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 811 | 180.66 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 817 | 180.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 887 | 180.93 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 897 | 180.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 942 | 181.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 964 | 181.11 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |