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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0231600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.99 (0.0387) R2 : 0.646
β1 : -3.1 (0.14) R2dD : 0.402 R2D : 0.416
β2 : 1.97 (0.12) R2dC : 0.346 R2C : 0.108
β3 : -1.9 (0.211) R2dE : 0.112 R2E : -0.0917
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.177 (0.0844) R2dN8 : 0.00487 R2N8 : -0.00499
σ : 0.708
deviance : 230.97
__
_____
C
peak time of C : 9.35
E
wheather : temperature
threshold : 21.59
memory length : 100
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.13
open length of G : 9.83

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.79 0.703 4.99 -3.05 1.96 -1.84 -1.47 -0.0292 -0.173 9.21 21.22 91 0.967 10
223.64 0.697 4.99 -3.05 1.93 -1.87 -1.47 -- -0.167 9.26 21.63 93 0.938 10
229.32 0.705 5 -3.24 2 -1.82 -- -1.96 -0.188 9.37 21.41 85 1.45 9.67
230.97 0.708 4.99 -3.1 1.97 -1.9 -- -- -0.177 9.35 21.59 100 1.13 9.83
285.34 0.787 5.18 -3.64 -- 1.31 -- -0.639 -0.637 -- 6.098 744 1.48 5.78
260.91 0.757 5.06 -3.21 1.28 -- -1.45 -- -0.388 9.92 -- -- -- --
268.79 0.768 5.06 -3.26 1.29 -- -- -- -0.389 10.1 -- -- -- --
269.83 0.765 5.13 -3.34 -- 1.16 -- -- -0.47 -- -12.12 766 2.91 2.6
474.59 1.01 4.89 -- 2.41 -2.48 -- -- 0.221 9.33 20.65 137 0.75 10.4
369.22 0.898 5.1 -3.28 -- -- -- -- -0.391 -- -- -- -- --
549.5 1.1 4.98 -- 1.3 -- -- -- -0.0254 10.3 -- -- -- --
366.94 0.892 4.83 -- -- -2.71 -- -- 0.775 -- 8.795 47520 1.24 10.6
653.23 1.19 5.01 -- -- -- -- -- -0.027 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.05 temperature 20.0 90 > th dose dependent rect. 1 10
2 226.62 temperature 10.0 270 > th dose dependent rect. 23 11
9 228.19 temperature 10.0 90 > th dose dependent rect. 17 18
13 229.37 temperature 25.0 90 > th dose independent rect. 7 4
15 229.51 temperature 20.0 270 > th dose dependent rect. 7 1
18 229.86 temperature 25.0 10 > th dose dependent rect. 19 16
28 231.62 temperature 20.0 270 > th dose dependent rect. 5 4
30 231.69 temperature 25.0 90 > th dose independent rect. 1 10
32 231.74 temperature 10.0 720 > th dose dependent rect. 23 3
52 232.81 atmosphere 1000.0 270 > th dose independent rect. 19 11
64 233.11 atmosphere 1000.0 720 > th dose independent rect. 18 13
76 233.47 temperature 25.0 90 > th dose independent rect. 4 7
86 233.94 atmosphere 1000.0 720 > th dose independent rect. 19 4
88 234.00 temperature 25.0 270 > th dose independent rect. 7 1
97 234.36 temperature 25.0 10 > th dose dependent sin 9 NA
121 234.86 wind 7.0 90 < th dose independent rect. 17 18
125 234.95 temperature 25.0 10 > th dose dependent rect. 7 4
135 235.36 radiation 1.0 270 < th dose dependent rect. 19 16
161 235.89 atmosphere 1000.0 720 > th dose independent rect. 19 19
165 235.98 humidity 90.0 10 < th dose dependent rect. 19 16
178 236.18 atmosphere 1000.0 10 > th dose independent rect. 21 11
181 236.23 radiation 1.0 270 < th dose independent rect. 19 16
182 236.24 temperature 30.0 90 < th dose dependent sin 6 NA
183 236.26 atmosphere 1000.0 270 > th dose independent rect. 2 13
190 236.38 atmosphere 1015.0 90 < th dose dependent rect. 17 18
198 236.57 atmosphere 1000.0 720 > th dose independent rect. 11 20
201 236.60 humidity 80.0 14400 < th dose dependent rect. 18 15
204 236.65 temperature 25.0 10 > th dose dependent rect. 4 7
215 236.75 wind 3.0 14400 < th dose independent rect. 10 14
217 236.79 wind 3.0 14400 > th dose independent rect. 10 14
219 236.80 precipitation 0.1 90 < th dose independent rect. 17 18
220 236.80 precipitation 0.1 90 < th dose dependent rect. 17 18
225 236.84 temperature 15.0 90 > th dose independent rect. 17 18
236 236.99 atmosphere 1000.0 720 > th dose independent rect. 20 17
246 237.11 atmosphere 1000.0 90 < th dose independent rect. 19 16
252 237.16 wind 3.0 14400 < th dose dependent rect. 10 2
269 237.31 atmosphere 1000.0 720 > th dose independent rect. 3 3
276 237.34 humidity 80.0 14400 < th dose dependent rect. 19 4
289 237.45 temperature 25.0 90 > th dose independent rect. 17 18
298 237.50 radiation 10.0 270 > th dose independent rect. 17 14
308 237.58 temperature 10.0 90 > th dose dependent sin 7 NA
311 237.58 wind 5.0 14400 < th dose dependent rect. 10 14
340 237.75 humidity 80.0 14400 < th dose dependent rect. 18 10
345 237.78 radiation 1.0 90 > th dose independent rect. 11 6
353 237.82 radiation 20.0 4320 > th dose independent rect. 16 16
365 237.87 humidity 50.0 90 > th dose independent rect. 17 18
370 237.91 wind 3.0 14400 > th dose independent sin 18 NA
395 238.01 atmosphere 1015.0 10 < th dose dependent rect. 18 17
398 238.02 humidity 90.0 14400 < th dose dependent sin 10 NA
399 238.03 wind 3.0 14400 < th dose independent sin 19 NA
400 238.03 wind 3.0 14400 < th dose independent rect. 10 4
412 238.07 wind 3.0 14400 > th dose independent rect. 9 6
414 238.07 wind 1.0 43200 > th dose independent rect. 13 17
422 238.12 wind 3.0 14400 > th dose independent rect. 10 4
423 238.12 wind 3.0 14400 < th dose independent rect. 9 6
437 238.18 humidity 80.0 14400 > th dose independent rect. 20 1
440 238.18 atmosphere 1000.0 10 < th dose independent rect. 20 15
447 238.21 wind 7.0 270 < th dose independent rect. 15 19
448 238.21 wind 5.0 14400 < th dose dependent rect. 9 11
450 238.22 atmosphere 1000.0 720 > th dose independent sin 12 NA
473 238.30 humidity 90.0 90 < th dose independent rect. 17 18
485 238.37 wind 5.0 14400 < th dose dependent rect. 9 8
489 238.38 wind 5.0 14400 < th dose dependent rect. 10 5
491 238.39 wind 7.0 270 < th dose independent rect. 14 21
501 238.42 atmosphere 1000.0 10 < th dose independent rect. 18 17
521 238.48 wind 3.0 14400 < th dose independent rect. 19 2
543 238.52 wind 1.0 43200 < th dose independent rect. 12 18
553 238.54 radiation 10.0 720 < th dose dependent rect. 16 7
569 238.61 radiation 10.0 270 > th dose independent rect. 6 1
604 238.65 wind 5.0 270 < th dose independent rect. 23 11
624 238.70 temperature 10.0 90 > th dose independent rect. 11 6
625 238.70 atmosphere 1015.0 90 < th dose independent rect. 11 6
639 238.73 wind 3.0 14400 > th dose independent rect. 19 2
650 238.75 precipitation 0.1 270 < th dose independent rect. 15 19
651 238.75 precipitation 0.1 270 < th dose dependent rect. 15 19
670 238.80 humidity 50.0 270 > th dose dependent rect. 18 11
671 238.82 atmosphere 1000.0 270 > th dose independent sin 8 NA
710 238.89 wind 5.0 14400 < th dose dependent sin 19 NA
731 238.94 humidity 50.0 14400 > th dose dependent rect. 21 3
768 239.01 wind 1.0 43200 > th dose independent rect. 23 6
786 239.04 atmosphere 995.0 90 > th dose independent rect. 11 6
803 239.07 wind 1.0 43200 > th dose independent rect. 24 4
813 239.08 humidity 50.0 14400 > th dose dependent rect. 19 14
816 239.09 wind 3.0 14400 < th dose dependent rect. 18 5
820 239.10 precipitation 0.1 90 < th dose independent rect. 11 6
822 239.10 precipitation 0.1 90 < th dose dependent rect. 11 6
833 239.13 atmosphere 995.0 90 > th dose independent rect. 17 18
834 239.13 humidity 60.0 14400 > th dose dependent rect. 20 5
844 239.14 wind 1.0 14400 > th dose dependent rect. 10 10
873 239.22 humidity 50.0 14400 > th dose dependent rect. 19 8
923 239.33 wind 1.0 14400 > th dose dependent rect. 10 7
935 239.35 humidity 80.0 14400 < th dose independent rect. 15 18
938 239.36 atmosphere 1015.0 90 < th dose dependent rect. 7 4
958 239.39 atmosphere 1000.0 720 > th dose independent rect. 13 18
978 239.41 atmosphere 1000.0 720 < th dose independent rect. 22 1
981 239.41 humidity 50.0 14400 > th dose dependent sin 10 NA
988 239.42 humidity 80.0 14400 > th dose independent rect. 18 15
994 239.44 wind 3.0 14400 > th dose independent rect. 11 1
995 239.44 wind 3.0 14400 < th dose independent rect. 11 1