BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0231600 Os06g0231600|Os06g0231600
(222 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0231600 Zinc finger, RING-type domain containing protein 366 e-102
Os02g0743700 Similar to RING-H2 finger protein ATL1Q 223 9e-59
Os10g0544600 Fibrillarin family protein 113 1e-25
Os06g0717600 Zinc finger, RING-type domain containing protein 110 1e-24
Os08g0550400 Similar to RING-H2 finger protein ATL5P 96 2e-20
Os07g0479100 Zinc finger, RING-type domain containing protein 92 3e-19
Os09g0542600 Similar to RING-H2 finger protein ATL1I 78 5e-15
Os12g0432600 Zinc finger, RING-type domain containing protein 67 9e-12
Os06g0534900 Zinc finger, RING-type domain containing protein 64 8e-11
Os01g0212700 Zinc finger, RING-type domain containing protein 64 9e-11
>Os06g0231600 Zinc finger, RING-type domain containing protein
Length = 222
Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/222 (81%), Positives = 182/222 (81%)
Query: 1 MEVAPXXXXXXXXXXXXXXXXXXXXXXXXGVVSGMLTGIFXXXXXXXXXXXXXXXXRASD 60
MEVAP GVVSGMLTGIF RASD
Sbjct: 1 MEVAPAAAMTRAEEESRRRAATRLPRLLRGVVSGMLTGIFAVAGGLTGAVTGALAGRASD 60
Query: 61 GGVLRGAGLGTFAGAVLSIEILEASRAYWCQDRSSSPGSLSMGDFVKQLIHARFVQEQNE 120
GGVLRGAGLGTFAGAVLSIEILEASRAYWCQDRSSSPGSLSMGDFVKQLIHARFVQEQNE
Sbjct: 61 GGVLRGAGLGTFAGAVLSIEILEASRAYWCQDRSSSPGSLSMGDFVKQLIHARFVQEQNE 120
Query: 121 ASGHITYRWQVGIADVVNGAVHEILGDVPSGEGLSKYSLMKLPYHVVIDHNNGSIGESLS 180
ASGHITYRWQVGIADVVNGAVHEILGDVPSGEGLSKYSLMKLPYHVVIDHNNGSIGESLS
Sbjct: 121 ASGHITYRWQVGIADVVNGAVHEILGDVPSGEGLSKYSLMKLPYHVVIDHNNGSIGESLS 180
Query: 181 CPVCLQDVVAGQTVRRLPKCSHTFHQPCVDKWLVGHGSCPMY 222
CPVCLQDVVAGQTVRRLPKCSHTFHQPCVDKWLVGHGSCPMY
Sbjct: 181 CPVCLQDVVAGQTVRRLPKCSHTFHQPCVDKWLVGHGSCPMY 222
>Os02g0743700 Similar to RING-H2 finger protein ATL1Q
Length = 220
Score = 223 bits (568), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 118/192 (61%), Positives = 140/192 (72%), Gaps = 1/192 (0%)
Query: 30 GVVSGMLTGIFXXXXXXXXXXXXXXXXRASDGGVLRGAGLGTFAGAVLSIEILEASRAYW 89
GV+SG LTG+F RASD GVLRGAGLG FAGAVLSIE+LEASRAYW
Sbjct: 25 GVISGALTGLFALAGALTGAVTGALAGRASDSGVLRGAGLGAFAGAVLSIEVLEASRAYW 84
Query: 90 CQDRSSSPGSLSMGDFVKQLIHARFVQEQNEASGHITYRWQVGIADVVNGAVHEILGDVP 149
C DR S G+ SM DF++QL+ ARFVQEQ SG+ T+RWQV I+D + +++I GD
Sbjct: 85 CSDRLGSHGTSSMADFIEQLLQARFVQEQIVPSGYATHRWQVSISDFGHDDLYDIFGDC- 143
Query: 150 SGEGLSKYSLMKLPYHVVIDHNNGSIGESLSCPVCLQDVVAGQTVRRLPKCSHTFHQPCV 209
S +GLS+ SL KLP++VV D S GE LSC +CLQD+V G+T RRLP CSHTFHQPCV
Sbjct: 144 SSKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCV 203
Query: 210 DKWLVGHGSCPM 221
DKWLVGHGSCP+
Sbjct: 204 DKWLVGHGSCPV 215
>Os10g0544600 Fibrillarin family protein
Length = 233
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 2/165 (1%)
Query: 58 ASDGGVLRGAGLGTFAGAVLSIEILEASRAYWCQDRSSSPGSLSMGDFVKQLIHARFVQE 117
A++ G+LRGAG+G +GAV SIE+ E+SR W S+ + M D + L+ R V+E
Sbjct: 65 ATESGMLRGAGIGAISGAVFSIEVAESSRDLWHSSDSAVWCLVYMVDIISSLLSGRLVRE 124
Query: 118 QNEASGHITYRWQVGIADVVNGAVHEILGDVPSGEGLSKYSLMKLP-YHVVIDHNNGSIG 176
+ + + Q+ ++ + +GL +L +LP + D+ S G
Sbjct: 125 KVGPAVQSAVQSQISAISSPFAETSDLF-ETGGTKGLPADTLRRLPAIKITGDNAVDSAG 183
Query: 177 ESLSCPVCLQDVVAGQTVRRLPKCSHTFHQPCVDKWLVGHGSCPM 221
E + C VCLQD G+ RRLP C H FH PC+D WLV HGSCP+
Sbjct: 184 EPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPL 228
>Os06g0717600 Zinc finger, RING-type domain containing protein
Length = 232
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 1/192 (0%)
Query: 31 VVSGMLTGIFXXXXXXXXXXXXXXXXRASDGGVLRGAGLGTFAGAVLSIEILEASRAYWC 90
V G++T IF A++ G+ RG G+G GA++SIE++++S W
Sbjct: 36 VFRGVITFIFAIAGLFLGAVTGGLIGLATESGLFRGTGIGAITGALVSIEVVDSSIRVWR 95
Query: 91 QDRSSSPGSLSMGDFVKQLIHARFVQEQNEASGHITYRWQVGIADVVNGAVHEILGDVPS 150
RS + + + L+ R V+E+ + + R Q+ D L ++
Sbjct: 96 SRRSGISSICYVLNVIYSLLTGRLVREKVDPAVQRVVRSQMNAVDSSPFRESPDLFEIEG 155
Query: 151 GEGLSKYSLMKLP-YHVVIDHNNGSIGESLSCPVCLQDVVAGQTVRRLPKCSHTFHQPCV 209
G+ + S+ KLP + ++ +IG+ C VCLQD G+ VR LP C H FH PC+
Sbjct: 156 TNGMPRASIDKLPEVRITEEYRRNAIGDLSGCSVCLQDFQTGEKVRSLPDCWHVFHVPCI 215
Query: 210 DKWLVGHGSCPM 221
D WL+ HGSCP+
Sbjct: 216 DGWLIKHGSCPL 227
>Os08g0550400 Similar to RING-H2 finger protein ATL5P
Length = 260
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 11/201 (5%)
Query: 30 GVVSGMLTGIFXXXXXXXXXXXXXXXXRASDGGVLRGAGLGTFAGAVLSIEILEASRAYW 89
V G++T +F A++ G++RG G+G +GAV+++E++++S A W
Sbjct: 44 AVARGIVTFVFATVGTILGAITGGLIGLATESGMVRGTGIGAISGAVVAMEVVDSSVAMW 103
Query: 90 CQDRSSSPGSLSMGDFVKQLIHARFVQEQNEASGHITYRWQVGIADVVNGAVHEILGDV- 148
C S L + D + L+ R V+E+ + + Q+ AD L ++
Sbjct: 104 CSHDSGIWSVLYVLDVIWSLLTGRLVREKVDPAVQNAVDSQMNAADAPFRESAPTLAEMF 163
Query: 149 --------PSGEGLSKYSLMKLPYHVVIDHNNGSIGESLSCPVCLQDVVAGQTVRRLPKC 200
+ G+ ++ LP V + C VCLQD+ G+ RRLP+C
Sbjct: 164 DTGIPGVAAAATGMPADAIAALP--VTTFAAAAGGDDRAGCSVCLQDLEDGERARRLPEC 221
Query: 201 SHTFHQPCVDKWLVGHGSCPM 221
HTFH C+D WL+ H SCP+
Sbjct: 222 GHTFHLRCIDSWLLRHASCPL 242
>Os07g0479100 Zinc finger, RING-type domain containing protein
Length = 249
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 7/193 (3%)
Query: 32 VSGMLTGIFXXXXXXXXXXXXXXXXRASDGGVLRGAGLGTFAGAVLSIEILEASRAYWCQ 91
V +LT +F +++ G+LRGAG+G +GAV SIE +E+ W
Sbjct: 49 VCALLTCVFAVVGSLVGVFIGAFMGMSTESGMLRGAGVGVVSGAVFSIEAVESCIEIW-- 106
Query: 92 DRSSSPGSLSM---GDFVKQLIHARFVQEQNEASGHITYRWQVGIADVVNGAVHEILGDV 148
RSS G S+ D + L R V E+ + + Q+ + +++
Sbjct: 107 -RSSESGKYSIIFVLDIISSLFSGRIVWEKVSPALQRAVQSQMSLLSTPFIDNNDLFETG 165
Query: 149 PSGEGLSKYSLMKLPYHVVIDHNNGSIGESLSCPVCLQDVVAGQTVRRLPKCSHTFHQPC 208
+G G+S+ + ++P N C VCLQD A Q VR LP C HTFH C
Sbjct: 166 NTG-GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARC 224
Query: 209 VDKWLVGHGSCPM 221
+D WL H SCP+
Sbjct: 225 IDNWLFRHASCPL 237
>Os09g0542600 Similar to RING-H2 finger protein ATL1I
Length = 217
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 59 SDGGVLRGAGLGTFAGAVLSIEILEASRAYWCQDRSSSPGSLSMGDFVKQLIHARFVQEQ 118
S+ G+L+G +G +GA +++E++++ WC + S + H +
Sbjct: 46 SEDGLLQGTLIGAISGAFIAMEVVDSLAKIWCYEEYS----------IATRAHLMLLVFW 95
Query: 119 NEASGHITYRWQV--GIADVVNGAVH---------EILGDV-----PSGEGLSKYSLMKL 162
N +T R V + V++ ++ E+ GD+ P G+ ++ +L
Sbjct: 96 NLVIDRLTVRTSVFPTLTTVLDSQLNAVPSRHRRAEVSGDLTGRSYPVVMGMRLAAVDQL 155
Query: 163 PYHVVIDHNNGSIGESLSCPVCLQDVVAGQTVRRLPKCSHTFHQPCVDKWLVGHGSCPM 221
P VI + +CP+CL D AG+ RRLP C H FH C+D WL+ H CPM
Sbjct: 156 P---VIKLTAAQTDATGACPICLHDFKAGEIARRLPACCHIFHLGCIDNWLLWHALCPM 211
>Os12g0432600 Zinc finger, RING-type domain containing protein
Length = 185
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 151 GEGLSKYSLMKLPYHVVIDHNNGSIGESLS-CPVCLQDVVAGQTVRRLPKCSHTFHQPCV 209
GLS+ + +P ++ GS G ++ C VC+ V G TVRRLP C H FH PCV
Sbjct: 95 ARGLSQEDIEAIP---AFEYRRGSSGSGVAQCAVCIAAVKDGDTVRRLPACGHAFHAPCV 151
Query: 210 DKWLVGHGSCPM 221
D WL H +CPM
Sbjct: 152 DGWLRDHATCPM 163
>Os06g0534900 Zinc finger, RING-type domain containing protein
Length = 412
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 181 CPVCLQDVVAGQTVRRLPKCSHTFHQPCVDKWLVGHGSCPM 221
C VCL+DVVAG+TVRRLP C H FH C+D WL H +CP+
Sbjct: 148 CAVCLEDVVAGETVRRLPSCGHLFHVDCIDMWLHAHRTCPL 188
>Os01g0212700 Zinc finger, RING-type domain containing protein
Length = 185
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 29/43 (67%)
Query: 179 LSCPVCLQDVVAGQTVRRLPKCSHTFHQPCVDKWLVGHGSCPM 221
L C VCL V AG+ VR+LPKC H FH CVD WL H +CPM
Sbjct: 97 LDCAVCLGQVDAGEKVRQLPKCGHLFHAECVDAWLRAHSTCPM 139
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,523,343
Number of extensions: 263774
Number of successful extensions: 1057
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1063
Number of HSP's successfully gapped: 16
Length of query: 222
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 125
Effective length of database: 11,971,043
Effective search space: 1496380375
Effective search space used: 1496380375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)