Os04g0590900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein ATL1B.
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Os04g0590900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING-H2 finger protein ATL1B.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.8 | 0.495 | 9.11 | -1.45 | 1.74 | -0.733 | -0.12 | -0.479 | -0.764 | 8.44 | 21.4 | 2709 | -- | -- |
| 111.25 | 0.491 | 9.09 | -1.34 | 1.74 | -0.683 | -0.127 | -- | -0.737 | 8.44 | 21.3 | 2691 | -- | -- |
| 110.85 | 0.49 | 9.11 | -1.46 | 1.74 | -0.732 | -- | -0.474 | -0.764 | 8.44 | 21.4 | 2708 | -- | -- |
| 111.29 | 0.491 | 9.09 | -1.34 | 1.74 | -0.689 | -- | -- | -0.736 | 8.44 | 21.3 | 2675 | -- | -- |
| 272.23 | 0.768 | 9.15 | -1.47 | -- | -0.906 | -- | -0.694 | -0.719 | -- | 21.52 | 2197 | -- | -- |
| 123.61 | 0.521 | 9.14 | -1.69 | 1.75 | -- | -0.115 | -- | -0.946 | 8.53 | -- | -- | -- | -- |
| 123.65 | 0.521 | 9.14 | -1.69 | 1.75 | -- | -- | -- | -0.946 | 8.53 | -- | -- | -- | -- |
| 215.53 | 0.684 | 9.14 | -1.44 | -- | -1.15 | -- | -- | -0.702 | -- | 25.9 | 591 | -- | -- |
| 120.24 | 0.511 | 9.02 | -- | 1.74 | -1.38 | -- | -- | -0.419 | 8.47 | 18.5 | 47520 | -- | -- |
| 294.83 | 0.802 | 9.18 | -1.69 | -- | -- | -- | -- | -0.929 | -- | -- | -- | -- | -- |
| 199.19 | 0.66 | 9.09 | -- | 1.74 | -- | -- | -- | -0.757 | 8.6 | -- | -- | -- | -- |
| 255.82 | 0.745 | 9.07 | -- | -- | -1.5 | -- | -- | -0.424 | -- | 26.38 | 640 | -- | -- |
| 369.81 | 0.898 | 9.14 | -- | -- | -- | -- | -- | -0.742 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.32 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 21 | 2 |
| 5 | 108.61 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 20 | 11 |
| 21 | 109.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 30 | 109.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 44 | 110.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 45 | 110.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 53 | 110.39 | wind | 1 | 270 | < th | dose independent | rect. | 23 | 2 |
| 123 | 111.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 130 | 111.18 | atmosphere | 1005 | 270 | < th | dose independent | sin | 11 | NA |
| 152 | 111.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 155 | 111.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 188 | 111.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 199 | 111.51 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 242 | 111.65 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 23 | 11 |
| 264 | 111.71 | wind | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 269 | 111.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 333 | 111.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 360 | 111.97 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 366 | 111.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 400 | 112.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 404 | 112.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 460 | 112.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 467 | 112.21 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 471 | 112.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 531 | 112.32 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 547 | 112.35 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 557 | 112.36 | wind | 1 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 564 | 112.37 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 589 | 112.40 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 615 | 112.43 | humidity | 60 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 632 | 112.45 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 673 | 112.51 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 683 | 112.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 714 | 112.54 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 15 |
| 719 | 112.55 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 727 | 112.55 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 735 | 112.55 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 737 | 112.56 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 739 | 112.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 740 | 112.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 763 | 112.58 | wind | 1 | 270 | < th | dose independent | rect. | 16 | 10 |
| 767 | 112.58 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 779 | 112.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 788 | 112.60 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 825 | 112.64 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 874 | 112.69 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 881 | 112.70 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 885 | 112.70 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 912 | 112.72 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 934 | 112.74 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |