Os06g0695900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os06g0695900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 260.94 | 0.759 | 3 | 0.253 | 0.174 | 1.78 | 0.983 | -6.77 | -0.00171 | 15 | 3.209 | 237 | 0.15 | 6.86 |
| 270.72 | 0.766 | 3 | 0.221 | 0.152 | 2.57 | 1.09 | -- | -0.012 | 15 | 3.595 | 240 | 0.376 | 6.7 |
| 263.25 | 0.756 | 2.99 | 0.301 | 0.218 | 1.73 | -- | -6.61 | 0.000369 | 16 | 3 | 238 | 0.0666 | 6.84 |
| 277.35 | 0.776 | 2.99 | 0.339 | 0.171 | 3 | -- | -- | 0.0291 | 15.1 | 4.8 | 220 | 0.625 | 6.23 |
| 265.25 | 0.759 | 3.01 | 0.295 | -- | 1.46 | -- | -7.7 | -0.0263 | -- | 3 | 238 | 0.15 | 6.75 |
| 292.59 | 0.802 | 3.01 | 0.199 | 0.053 | -- | 1.68 | -- | -0.0378 | 15.7 | -- | -- | -- | -- |
| 300.91 | 0.812 | 3 | 0.225 | 0.0787 | -- | -- | -- | -0.0284 | 12.8 | -- | -- | -- | -- |
| 272.45 | 0.769 | 3 | 0.297 | -- | 4.28 | -- | -- | 0.00181 | -- | 6.009 | 175 | 2.5 | 4.08 |
| 274.24 | 0.771 | 3 | -- | 0.136 | 4.24 | -- | -- | -0.0381 | 14.4 | 5.7 | 229 | 2.05 | 2.67 |
| 301.3 | 0.811 | 3 | 0.222 | -- | -- | -- | -- | -0.0299 | -- | -- | -- | -- | -- |
| 302.25 | 0.813 | 3.01 | -- | 0.0751 | -- | -- | -- | -0.0535 | 12.7 | -- | -- | -- | -- |
| 274.75 | 0.772 | 3 | -- | -- | 4.23 | -- | -- | -0.0315 | -- | 6.007 | 172 | 2.51 | 4.57 |
| 302.6 | 0.812 | 3.01 | -- | -- | -- | -- | -- | -0.0545 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 262.80 | wind | 3.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 3 | 263.68 | wind | 3.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 7 | 264.79 | wind | 3.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 14 | 265.77 | wind | 3.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 17 | 265.82 | wind | 3.0 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 47 | 267.85 | wind | 7.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 61 | 268.49 | wind | 3.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 75 | 268.95 | wind | 3.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 129 | 270.52 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 132 | 270.53 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 5 |
| 145 | 270.81 | wind | 3.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 147 | 270.91 | precipitation | 0.1 | 90 | > th | dose independent | sin | 5 | NA |
| 149 | 271.03 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 6 | NA |
| 153 | 271.12 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 11 |
| 167 | 271.47 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 169 | 271.48 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 3 |
| 354 | 273.61 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 15 |
| 356 | 273.61 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 402 | 274.28 | precipitation | 0.1 | 90 | < th | dose independent | sin | 8 | NA |
| 403 | 274.28 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 8 | NA |
| 504 | 275.33 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 5 | 9 |
| 582 | 275.43 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 5 | 1 |
| 583 | 275.43 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 5 | 1 |
| 615 | 275.53 | wind | 3.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 630 | 275.80 | wind | 9.0 | 720 | > th | dose independent | rect. | 19 | 2 |
| 638 | 275.87 | wind | 3.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 693 | 276.58 | wind | 9.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 724 | 277.06 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 772 | 277.42 | wind | 3.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 954 | 278.63 | wind | 1.0 | 720 | > th | dose dependent | rect. | 17 | 15 |