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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0445000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING-H2 finger protein ATL5A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.69 (0.0666) R2 : 0.377
β1 : -2.61 (0.245) R2dD : 0.163 R2D : 0.126
β2 : 1.16 (0.158) R2dC : 0.0735 R2C : 0.0467
β3 : 1.48 (0.148) R2dE : 0.14 R2E : 0.0896
β4 : 2.95 (0.604) R2dD*C : 0.0328 R2D*C : 0.0352
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.631 (0.144) R2dN8 : 0.0363 R2N8 : -0.0169
σ : 1.24
deviance : 710.87
__
_____
C
peak time of C : 0.604
E
wheather : atmosphere
threshold : 1005
memory length : 11
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.15
open length of G : 6.47

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
702.01 1.24 5.7 -2.72 1.18 1.42 2.71 -1.73 -0.665 1.11 1005 10 4.17 6.06
710.87 1.24 5.69 -2.61 1.16 1.48 2.95 -- -0.631 0.604 1005 11 4.15 6.47
731.71 1.26 5.71 -2.82 1.21 1.4 -- -1.98 -0.681 1.45 1005 11 4.15 6.47
744.74 1.28 5.69 -2.7 1.19 1.32 -- -- -0.63 1.61 1005 9 4.18 6.48
817.12 1.34 5.7 -2.81 -- 1.44 -- -2.01 -0.664 -- 1005 11 4.15 6.47
809.91 1.33 5.62 -2.55 1.62 -- 2.13 -- -0.436 3.39 -- -- -- --
821.46 1.34 5.62 -2.59 1.66 -- -- -- -0.45 3.9 -- -- -- --
829.62 1.34 5.68 -2.66 -- 1.41 -- -- -0.617 -- 1005 8 4.14 6.55
936.04 1.43 5.61 -- 1.16 1.18 -- -- -0.312 1.86 1005 9 4.18 6.38
973.07 1.46 5.63 -2.52 -- -- -- -- -0.405 -- -- -- -- --
997.62 1.48 5.56 -- 1.61 -- -- -- -0.162 3.92 -- -- -- --
1016.13 1.48 5.61 -- -- 1.31 -- -- -0.308 -- 1005 8 4.15 6.6
1140.17 1.58 5.57 -- -- -- -- -- -0.126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 712.51 atmosphere 1005.0 10 > th dose independent rect. 4 6
4 715.66 temperature 20.0 270 > th dose independent rect. 14 17
5 716.35 temperature 10.0 270 > th dose dependent rect. 24 9
11 718.34 temperature 15.0 90 > th dose dependent rect. 2 7
20 720.70 temperature 20.0 90 > th dose independent rect. 3 6
27 722.85 temperature 20.0 270 > th dose independent rect. 24 8
38 723.57 temperature 15.0 10 > th dose dependent rect. 2 8
48 725.16 atmosphere 1000.0 10 > th dose dependent rect. 4 6
49 725.18 atmosphere 1000.0 90 > th dose dependent rect. 3 6
79 729.46 atmosphere 1005.0 270 > th dose independent rect. 4 2
83 729.87 atmosphere 1000.0 10 > th dose dependent rect. 2 8
117 732.08 wind 9.0 270 < th dose independent rect. 9 16
118 732.20 temperature 15.0 10 > th dose dependent rect. 24 10
127 732.87 humidity 50.0 270 > th dose dependent rect. 1 8
135 733.33 atmosphere 1005.0 90 > th dose dependent rect. 24 9
145 733.96 wind 9.0 90 < th dose independent rect. 9 18
146 734.00 humidity 70.0 720 > th dose independent rect. 19 8
148 734.02 radiation 30.0 90 < th dose independent rect. 3 7
149 734.06 temperature 15.0 270 > th dose independent rect. 9 15
159 734.64 temperature 15.0 720 > th dose dependent rect. 17 8
165 734.91 wind 9.0 270 < th dose independent rect. 1 8
166 734.91 temperature 10.0 270 > th dose dependent rect. 15 16
167 734.93 temperature 10.0 270 > th dose independent rect. 1 8
169 734.93 humidity 50.0 270 > th dose independent rect. 1 8
170 734.93 atmosphere 995.0 270 > th dose independent rect. 1 8
171 734.93 atmosphere 1015.0 270 < th dose independent rect. 1 8
178 735.20 radiation 1.0 270 < th dose dependent rect. 5 21
182 735.27 radiation 1.0 270 < th dose dependent rect. 9 17
184 735.30 precipitation 0.1 270 < th dose independent rect. 1 8
185 735.30 precipitation 0.1 270 < th dose dependent rect. 1 8
187 735.33 precipitation 0.1 270 < th dose independent rect. 9 16
188 735.33 precipitation 0.1 270 < th dose dependent rect. 9 16
190 735.44 temperature 20.0 30 > th dose independent rect. 4 16
193 735.46 humidity 60.0 90 > th dose independent rect. 3 6
197 735.60 humidity 50.0 270 > th dose independent rect. 9 16
199 735.65 radiation 40.0 270 < th dose independent rect. 1 8
215 736.02 precipitation 0.1 90 < th dose independent rect. 9 18
216 736.02 precipitation 0.1 90 < th dose dependent rect. 9 18
220 736.07 precipitation 0.1 90 < th dose independent rect. 3 6
223 736.07 precipitation 0.1 90 < th dose dependent rect. 3 6
225 736.08 wind 9.0 90 < th dose independent rect. 3 6
226 736.08 temperature 10.0 90 > th dose independent rect. 3 6
229 736.08 atmosphere 995.0 90 > th dose independent rect. 3 6
230 736.08 atmosphere 1015.0 90 < th dose independent rect. 3 6
231 736.08 temperature 10.0 90 > th dose independent rect. 9 18
244 736.54 temperature 15.0 10 > th dose independent rect. 10 18
248 736.77 atmosphere 1005.0 10 > th dose independent rect. 24 10
249 736.78 humidity 80.0 270 > th dose independent rect. 1 7
255 736.97 temperature 20.0 270 > th dose independent rect. 2 17
265 737.22 temperature 15.0 10 > th dose independent rect. 10 16
277 737.47 temperature 30.0 270 < th dose independent rect. 1 8
282 737.56 wind 9.0 90 < th dose dependent rect. 3 6
291 737.74 radiation 1.0 270 < th dose independent rect. 10 16
307 738.17 radiation 40.0 270 < th dose independent rect. 14 16
311 738.32 temperature 30.0 90 < th dose independent rect. 3 6
313 738.35 radiation 1.0 270 < th dose dependent sin 14 NA
324 738.77 wind 9.0 10 < th dose independent rect. 10 18
329 738.96 humidity 70.0 720 > th dose independent rect. 17 14
337 739.15 humidity 50.0 90 > th dose dependent rect. 3 7
349 739.38 precipitation 0.1 10 < th dose independent rect. 10 18
351 739.38 precipitation 0.1 10 < th dose dependent rect. 10 18
355 739.43 wind 9.0 270 < th dose independent rect. 6 8
381 739.76 temperature 20.0 720 > th dose dependent rect. 21 2
386 739.85 precipitation 0.1 270 < th dose independent rect. 6 8
387 739.85 precipitation 0.1 270 < th dose dependent rect. 6 8
396 740.05 wind 9.0 10 < th dose independent rect. 4 6
397 740.05 temperature 10.0 10 > th dose independent rect. 4 6
401 740.05 atmosphere 1015.0 10 < th dose independent rect. 4 6
402 740.05 wind 1.0 270 > th dose independent rect. 7 7
406 740.08 radiation 40.0 270 < th dose dependent rect. 1 8
410 740.18 atmosphere 1005.0 270 > th dose dependent rect. 4 2
415 740.27 wind 1.0 270 > th dose independent rect. 9 16
416 740.29 temperature 10.0 270 > th dose independent rect. 6 8
417 740.29 atmosphere 995.0 270 > th dose independent rect. 6 8
418 740.29 atmosphere 1015.0 270 < th dose independent rect. 6 8
419 740.29 temperature 10.0 270 > th dose independent rect. 14 16
421 740.33 precipitation 0.1 10 < th dose independent rect. 4 6
422 740.33 precipitation 0.1 10 < th dose dependent rect. 4 6
430 740.49 radiation 40.0 90 < th dose dependent rect. 3 7
448 740.82 wind 9.0 10 < th dose independent rect. 10 16
454 740.87 wind 9.0 270 < th dose dependent rect. 24 9
468 741.10 humidity 50.0 10 > th dose independent rect. 10 18
473 741.14 precipitation 0.1 10 < th dose independent rect. 10 16
474 741.14 precipitation 0.1 10 < th dose dependent rect. 10 16
507 741.45 atmosphere 995.0 270 > th dose independent rect. 14 16
511 741.56 radiation 40.0 10 < th dose independent rect. 4 6
521 741.70 humidity 50.0 270 > th dose independent rect. 6 8
539 741.96 wind 9.0 10 < th dose independent rect. 2 8
540 741.96 temperature 10.0 10 > th dose independent rect. 2 8
543 741.96 atmosphere 995.0 10 > th dose independent rect. 2 8
544 741.96 atmosphere 1015.0 10 < th dose independent rect. 2 8
559 742.10 temperature 15.0 720 > th dose dependent rect. 21 4
569 742.14 atmosphere 995.0 90 > th dose independent rect. 9 18
581 742.18 wind 9.0 270 < th dose independent rect. 14 16
582 742.20 radiation 40.0 90 < th dose dependent rect. 15 18
592 742.33 radiation 1.0 270 < th dose independent sin 14 NA
608 742.51 radiation 1.0 270 < th dose dependent rect. 18 8
627 742.68 radiation 1.0 270 > th dose independent rect. 6 8
660 742.97 temperature 30.0 270 < th dose independent rect. 18 8
677 743.17 temperature 15.0 270 > th dose independent rect. 18 8
679 743.19 temperature 10.0 1440 > th dose independent rect. 3 8
682 743.19 atmosphere 995.0 1440 > th dose independent rect. 3 8
683 743.19 temperature 10.0 1440 > th dose independent rect. 11 16
699 743.29 atmosphere 995.0 270 > th dose independent rect. 9 16
705 743.39 precipitation 0.1 270 < th dose independent rect. 14 16
706 743.39 precipitation 0.1 270 < th dose dependent rect. 14 16
711 743.49 radiation 1.0 270 < th dose independent rect. 18 8
748 743.79 precipitation 0.1 270 < th dose independent rect. 18 8
749 743.79 precipitation 0.1 270 < th dose dependent rect. 18 8
757 743.93 humidity 90.0 10 < th dose independent rect. 1 14
813 744.35 atmosphere 995.0 10 > th dose independent rect. 10 18
854 744.73 atmosphere 995.0 270 > th dose independent rect. 18 8
876 744.84 atmosphere 1000.0 30 > th dose independent rect. 4 15
877 744.86 temperature 30.0 10 < th dose independent rect. 4 6
882 744.95 radiation 20.0 270 < th dose independent rect. 18 8
885 744.95 temperature 10.0 270 > th dose independent rect. 2 16
888 744.95 atmosphere 1015.0 270 < th dose independent rect. 2 16
889 744.95 radiation 20.0 270 < th dose dependent rect. 18 8
893 744.96 temperature 15.0 10 > th dose independent rect. 20 8
905 745.05 wind 9.0 270 < th dose dependent rect. 14 17
921 745.10 wind 3.0 270 < th dose independent rect. 24 7
937 745.20 wind 9.0 270 < th dose independent rect. 18 8
942 745.26 atmosphere 995.0 270 > th dose independent rect. 2 16
963 745.42 humidity 50.0 10 > th dose independent rect. 10 16
965 745.43 precipitation 0.1 270 < th dose independent rect. 2 16
966 745.43 precipitation 0.1 270 < th dose dependent rect. 2 16
995 745.56 radiation 40.0 30 < th dose independent rect. 10 18