Os04g0450400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os04g0450400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.14 | 0.434 | 11.4 | 1.6 | 2.11 | 4.34 | 0.244 | -0.255 | 0.673 | 19.7 | 0.999 | 779 | -- | -- |
| 84.96 | 0.429 | 11.4 | 1.61 | 2.17 | 4.43 | 0.406 | -- | 0.678 | 19.7 | 0.893 | 785 | -- | -- |
| 85.11 | 0.43 | 11.4 | 1.61 | 2.13 | 4.37 | -- | -0.485 | 0.673 | 19.7 | 0.9428 | 782 | -- | -- |
| 85.34 | 0.43 | 11.4 | 1.61 | 2.18 | 4.46 | -- | -- | 0.674 | 19.8 | 0.9269 | 790 | -- | -- |
| 101.26 | 0.469 | 11.4 | 1.31 | -- | 2.62 | -- | -0.592 | 0.637 | -- | 1.692 | 1932 | -- | -- |
| 118.97 | 0.511 | 11.4 | 1.21 | 1.54 | -- | -0.195 | -- | 0.512 | 3.96 | -- | -- | -- | -- |
| 119.08 | 0.511 | 11.4 | 1.21 | 1.54 | -- | -- | -- | 0.513 | 3.96 | -- | -- | -- | -- |
| 96.44 | 0.457 | 11.3 | 1.61 | -- | 2.7 | -- | -- | 0.74 | -- | 1 | 1944 | -- | -- |
| 144.69 | 0.56 | 11.4 | -- | 1.33 | 3.14 | -- | -- | 0.471 | 19.9 | 1.861 | 729 | -- | -- |
| 248.67 | 0.737 | 11.4 | 1.28 | -- | -- | -- | -- | 0.554 | -- | -- | -- | -- | -- |
| 157.81 | 0.588 | 11.4 | -- | 1.56 | -- | -- | -- | 0.378 | 3.95 | -- | -- | -- | -- |
| 146.37 | 0.563 | 11.4 | -- | -- | 1.6 | -- | -- | 0.482 | -- | 2.76 | 488 | -- | -- |
| 291.57 | 0.797 | 11.4 | -- | -- | -- | -- | -- | 0.413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 12 | 85.46 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 18 | 85.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 25 | 85.91 | temperature | 20 | 720 | > th | dose dependent | sin | 22 | NA |
| 29 | 85.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 34 | 86.15 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 45 | 86.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 56 | 86.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 59 | 86.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 80 | 86.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 96 | 86.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 115 | 87.08 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 142 | 87.28 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 148 | 87.37 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 161 | 87.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 163 | 87.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 203 | 87.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 241 | 88.09 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 254 | 88.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 313 | 88.33 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 402 | 88.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 14 |
| 446 | 88.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 460 | 88.86 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 461 | 88.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 468 | 88.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 470 | 88.88 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 472 | 88.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 477 | 88.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 524 | 89.04 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 541 | 89.07 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 567 | 89.16 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 582 | 89.20 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 23 |
| 592 | 89.21 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 606 | 89.27 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 628 | 89.31 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 637 | 89.36 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 644 | 89.39 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 655 | 89.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 664 | 89.46 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 23 |
| 668 | 89.46 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 670 | 89.49 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 704 | 89.56 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 712 | 89.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 730 | 89.62 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 754 | 89.69 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 834 | 89.79 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 877 | 89.89 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 921 | 90.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 930 | 90.07 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 971 | 90.15 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 973 | 90.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 982 | 90.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 997 | 90.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |