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Os01g0822800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING-H2 finger protein ATL3C.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0351) R2 : 0.949
β1 : 1.01 (0.129) R2dD : 0.00703 R2D : 0.00138
β2 : 3.14 (0.0903) R2dC : 0.137 R2C : 0.0844
β3 : -6.19 (0.0707) R2dE : 0.863 R2E : 0.806
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.34 (0.075) R2dN8 : 0.00309 R2N8 : -0.00348
σ : 0.656
deviance : 198.51
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_____
C
peak time of C : 19.6
E
wheather : radiation
threshold : 33.46
memory length : 270
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 14.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
189.83 0.647 10.7 1.05 3.08 -6.23 1.82 -0.045 0.348 19.7 33.74 271 16 14
189.61 0.641 10.7 1.04 3.11 -6.2 1.81 -- 0.345 19.6 34.6 271 16 14
198.31 0.656 10.7 1.01 3.1 -6.25 -- 0.303 0.347 19.7 32.93 270 16 14
198.51 0.656 10.7 1.01 3.14 -6.19 -- -- 0.34 19.6 33.46 270 15.9 14.1
350.22 0.872 10.6 1.42 -- -7.22 -- 0.94 0.304 -- 27.64 438 15.4 14.7
361.29 0.891 10.6 0.949 7.86 -- 0.393 -- 0.261 15.1 -- -- -- --
361.79 0.891 10.6 0.957 7.86 -- -- -- 0.263 15.1 -- -- -- --
339.4 0.858 10.6 1.03 -- -7.27 -- -- 0.174 -- 24.31 438 15.2 14.8
224.6 0.698 10.7 -- 3.1 -6.2 -- -- 0.227 19.6 32.06 272 15.9 14.1
3887.54 2.91 10.7 0.622 -- -- -- -- 0.058 -- -- -- -- --
385.92 0.919 10.7 -- 7.85 -- -- -- 0.157 15.1 -- -- -- --
362.5 0.887 10.7 -- -- -7.35 -- -- 0.0429 -- 28.21 444 15.2 14.8
3897.74 2.91 10.7 -- -- -- -- -- -0.011 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.37 radiation 30.0 270 < th dose dependent rect. 16 14
5 197.47 radiation 20.0 270 < th dose independent rect. 16 14
7 202.45 radiation 1.0 270 < th dose independent rect. 2 18
8 202.63 radiation 1.0 270 < th dose independent rect. 1 20
9 203.40 radiation 1.0 270 < th dose dependent rect. 2 18
14 207.84 precipitation 0.1 270 < th dose independent rect. 6 10
15 207.84 precipitation 0.1 270 < th dose dependent rect. 6 10
16 207.93 radiation 1.0 270 < th dose dependent rect. 1 20
17 208.62 temperature 10.0 270 > th dose independent rect. 6 10
18 208.62 atmosphere 1015.0 270 < th dose independent rect. 6 10
19 208.62 temperature 10.0 270 > th dose independent rect. 16 14
20 208.62 radiation 40.0 270 < th dose independent rect. 16 14
25 209.66 wind 9.0 270 < th dose independent rect. 6 10
26 209.75 humidity 50.0 270 > th dose independent rect. 16 14
27 210.18 wind 9.0 270 < th dose independent rect. 16 14
39 215.03 atmosphere 995.0 270 > th dose independent rect. 6 10
46 217.83 atmosphere 995.0 270 > th dose independent rect. 16 14
53 220.21 precipitation 0.1 270 < th dose independent rect. 21 4
54 220.21 precipitation 0.1 270 < th dose dependent rect. 21 4
55 220.35 wind 7.0 270 < th dose independent rect. 21 4
59 220.64 temperature 10.0 270 > th dose independent rect. 21 4
60 220.64 temperature 30.0 270 < th dose independent rect. 21 4
61 220.64 humidity 50.0 270 > th dose independent rect. 21 4
64 220.64 atmosphere 995.0 270 > th dose independent rect. 21 4
65 220.64 radiation 1.0 270 < th dose independent rect. 21 4
70 220.64 temperature 10.0 270 > th dose independent rect. 1 20
71 220.64 radiation 1.0 270 < th dose dependent rect. 21 4
77 221.55 atmosphere 1015.0 270 < th dose independent rect. 1 20
81 222.65 temperature 10.0 270 > th dose dependent rect. 2 4
82 223.61 wind 9.0 270 < th dose independent rect. 1 20
83 223.78 precipitation 0.1 270 < th dose independent rect. 6 20
84 223.78 precipitation 0.1 270 < th dose dependent rect. 6 20
87 224.48 radiation 1.0 270 > th dose independent rect. 6 10
98 226.21 radiation 1.0 270 < th dose dependent sin 1 NA
100 226.45 radiation 10.0 270 < th dose independent rect. 2 4
103 227.71 radiation 1.0 90 > th dose independent rect. 7 12
113 227.97 atmosphere 1010.0 270 < th dose independent rect. 2 4
117 228.20 wind 9.0 270 < th dose independent rect. 6 20
118 228.34 radiation 10.0 270 < th dose dependent rect. 2 4
125 228.70 wind 9.0 270 < th dose independent rect. 2 4
126 228.70 temperature 10.0 270 > th dose independent rect. 2 4
128 228.70 temperature 30.0 270 < th dose independent rect. 2 4
129 228.70 humidity 50.0 270 > th dose independent rect. 2 4
132 228.70 atmosphere 995.0 270 > th dose independent rect. 2 4
137 228.70 temperature 10.0 270 > th dose independent rect. 6 20
140 229.12 humidity 50.0 270 > th dose dependent rect. 2 4
153 229.15 temperature 10.0 90 > th dose independent rect. 3 19
154 229.15 atmosphere 1015.0 90 < th dose independent rect. 3 19
160 229.29 precipitation 0.1 270 < th dose independent rect. 16 14
161 229.29 precipitation 0.1 270 < th dose dependent rect. 16 14
192 230.37 radiation 1.0 270 < th dose independent sin 2 NA
196 231.07 wind 9.0 90 < th dose independent rect. 3 19
197 231.10 precipitation 0.1 270 < th dose independent rect. 2 4
198 231.10 precipitation 0.1 270 < th dose dependent rect. 2 4
201 231.36 wind 9.0 270 < th dose dependent rect. 21 4
203 231.44 atmosphere 995.0 270 > th dose independent rect. 1 20
207 231.68 humidity 50.0 270 > th dose independent rect. 1 20
231 231.93 wind 1.0 270 > th dose independent rect. 21 4
239 232.70 precipitation 0.1 270 < th dose independent rect. 1 20
240 232.70 precipitation 0.1 270 < th dose dependent rect. 1 20
241 232.74 radiation 10.0 10 < th dose independent rect. 3 20
242 232.78 temperature 10.0 270 > th dose dependent rect. 21 4
243 232.92 humidity 50.0 90 > th dose dependent rect. 17 14
246 233.18 humidity 50.0 90 > th dose dependent rect. 3 19
247 233.21 radiation 10.0 10 < th dose independent rect. 5 18
248 233.29 humidity 50.0 270 > th dose dependent rect. 21 4
254 233.54 precipitation 0.1 270 < th dose independent rect. 20 6
255 233.54 precipitation 0.1 270 < th dose dependent rect. 20 6
256 233.63 wind 7.0 270 < th dose independent rect. 20 6
262 233.82 humidity 70.0 90 > th dose dependent rect. 3 19
265 233.84 temperature 10.0 270 > th dose independent rect. 20 6
266 233.84 temperature 30.0 270 < th dose independent rect. 20 6
267 233.84 humidity 50.0 270 > th dose independent rect. 20 6
270 233.84 atmosphere 995.0 270 > th dose independent rect. 20 6
271 233.84 radiation 1.0 270 < th dose independent rect. 20 6
278 233.84 radiation 1.0 270 < th dose dependent rect. 20 6
289 234.58 radiation 1.0 270 < th dose independent rect. 2 6
324 236.11 precipitation 0.1 270 < th dose independent rect. 21 13
325 236.11 precipitation 0.1 270 < th dose dependent rect. 21 13
341 236.26 atmosphere 995.0 90 > th dose independent rect. 3 19
386 236.49 wind 9.0 270 < th dose dependent rect. 2 4
389 236.68 radiation 1.0 270 > th dose independent sin 2 NA
394 237.09 humidity 70.0 10 > th dose dependent rect. 3 19
399 237.38 precipitation 0.1 90 < th dose independent rect. 3 19
400 237.38 precipitation 0.1 90 < th dose dependent rect. 3 19
404 237.49 radiation 30.0 90 < th dose dependent rect. 3 6
411 237.77 humidity 50.0 10 > th dose dependent rect. 3 20
437 238.28 radiation 10.0 4320 < th dose dependent rect. 23 5
439 238.35 wind 9.0 270 < th dose independent rect. 21 13
444 238.41 temperature 10.0 270 > th dose independent rect. 10 11
445 238.41 temperature 10.0 270 > th dose independent rect. 21 13
446 238.41 atmosphere 995.0 270 > th dose independent rect. 21 13
447 238.42 temperature 10.0 270 > th dose dependent rect. 22 2
484 239.06 humidity 50.0 270 > th dose independent rect. 21 13
544 239.72 humidity 70.0 90 > th dose dependent rect. 3 6
557 240.05 temperature 30.0 270 < th dose independent rect. 21 13
559 240.06 radiation 10.0 10 < th dose independent rect. 3 6
562 240.08 atmosphere 1015.0 270 < th dose independent rect. 21 4
604 240.88 humidity 50.0 270 > th dose independent rect. 6 10
624 241.25 wind 1.0 270 > th dose independent rect. 22 2
634 241.40 atmosphere 1015.0 270 < th dose independent rect. 10 11
638 241.58 temperature 10.0 1440 > th dose independent rect. 23 5
641 241.58 temperature 30.0 1440 < th dose independent rect. 23 5
645 241.58 humidity 50.0 1440 > th dose independent rect. 23 5
654 241.58 atmosphere 995.0 1440 > th dose independent rect. 23 5
655 241.58 radiation 1.0 1440 < th dose independent rect. 23 5
675 241.58 temperature 10.0 1440 > th dose independent rect. 4 19
728 242.44 wind 1.0 270 > th dose independent rect. 6 10
739 242.67 atmosphere 995.0 270 > th dose dependent rect. 22 3
869 243.29 atmosphere 1015.0 90 < th dose dependent rect. 3 4
888 243.72 wind 1.0 270 > th dose independent rect. 20 6
920 244.01 precipitation 0.1 10 < th dose independent rect. 3 19
921 244.01 precipitation 0.1 10 < th dose dependent rect. 3 19
927 244.21 temperature 15.0 90 > th dose dependent rect. 5 1
931 244.27 atmosphere 995.0 270 > th dose independent rect. 6 20
964 245.04 temperature 30.0 90 < th dose independent rect. 17 14
978 245.42 atmosphere 1015.0 270 < th dose independent rect. 22 2