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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0790600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.08 (0.0395) R2 : 0.373
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.07 (0.104) R2dC : 0.143 R2C : 0.162
β3 : 1.35 (0.109) R2dE : 0.2 R2E : 0.208
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.261 (0.0833) R2dN8 : 0.017 R2N8 : 0.0108
σ : 0.742
deviance : 253.85
__
_____
C
peak time of C : 6.23
E
wheather : temperature
threshold : 27.12
memory length : 1274
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
242.54 0.732 4.18 -1.19 1.05 1.66 0.553 -2.2 -0.0112 6.08 26.06 1284 -- --
243.84 0.727 4.11 -0.659 1.04 1.46 0.485 -- 0.0956 6.13 25.94 1275 -- --
243.09 0.726 4.17 -1.18 1.06 1.68 -- -2.19 -0.00537 6.29 26.14 1274 -- --
244.35 0.728 4.11 -0.634 1.05 1.46 -- -- 0.101 6.25 25.95 1264 -- --
299.89 0.807 4.22 -1.21 -- 1.81 -- -2.08 -0.134 -- 24.73 1293 -- --
326.81 0.848 4.09 -0.165 1.13 -- 1.41 -- 0.201 5.13 -- -- -- --
330.92 0.852 4.09 -0.163 1.15 -- -- -- 0.196 5.54 -- -- -- --
300.18 0.807 4.16 -0.668 -- 1.64 -- -- -0.016 -- 24.43 1293 -- --
253.85 0.742 4.08 -- 1.07 1.35 -- -- 0.261 6.23 27.12 1274 -- --
400.13 0.935 4.11 -0.125 -- -- -- -- 0.224 -- -- -- -- --
331.62 0.852 4.09 -- 1.15 -- -- -- 0.214 5.54 -- -- -- --
310.92 0.821 4.13 -- -- 1.48 -- -- 0.108 -- 24.92 1291 -- --
400.54 0.934 4.1 -- -- -- -- -- 0.237 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 240.72 temperature 25 720 > th dose dependent rect. 18 14
2 242.04 temperature 25 720 > th dose dependent rect. 18 6
14 244.49 temperature 25 1440 > th dose dependent rect. 15 8
21 244.68 temperature 25 1440 > th dose dependent rect. 13 20
22 244.69 temperature 25 1440 > th dose dependent rect. 15 18
33 244.90 temperature 20 720 > th dose dependent sin 14 NA
41 245.18 temperature 25 1440 > th dose dependent rect. 15 4
44 245.27 temperature 20 720 > th dose dependent rect. 15 14
45 245.29 temperature 25 1440 > th dose dependent rect. 16 1
140 246.52 temperature 15 720 > th dose dependent rect. 15 9
202 247.76 temperature 25 1440 > th dose dependent rect. 6 18
267 248.18 temperature 30 1440 < th dose independent rect. 15 16
270 248.20 temperature 25 1440 > th dose dependent no NA NA
272 248.22 temperature 30 1440 < th dose independent rect. 15 14
279 248.27 temperature 30 1440 < th dose independent rect. 15 12
290 248.35 temperature 10 720 > th dose dependent rect. 13 16
291 248.35 temperature 25 1440 > th dose dependent rect. 20 23
296 248.37 temperature 30 1440 < th dose independent sin 13 NA
297 248.37 temperature 30 1440 < th dose independent rect. 15 10
318 248.53 temperature 30 1440 < th dose independent rect. 15 6
332 248.60 temperature 30 1440 > th dose independent rect. 15 4
410 249.09 temperature 30 1440 > th dose independent sin 13 NA
561 250.37 temperature 30 1440 < th dose independent rect. 9 22
564 250.39 temperature 30 1440 < th dose independent rect. 9 20
568 250.41 temperature 30 1440 < th dose independent rect. 9 18
573 250.45 temperature 30 1440 < th dose independent rect. 9 16
579 250.50 temperature 30 1440 > th dose independent rect. 14 22
586 250.52 temperature 30 1440 < th dose independent rect. 9 12
713 250.94 temperature 30 1440 < th dose independent rect. 17 23
717 250.97 temperature 30 1440 < th dose independent rect. 4 23
733 250.98 temperature 30 1440 < th dose independent rect. 6 23
735 250.99 temperature 30 1440 < th dose independent rect. 23 22
739 251.00 temperature 30 1440 < th dose independent rect. 6 21
744 251.00 temperature 30 1440 < th dose independent rect. 2 23
747 251.01 temperature 30 1440 < th dose independent no NA NA
768 251.02 temperature 30 1440 < th dose independent rect. 4 21
800 251.07 temperature 30 1440 < th dose independent rect. 2 19
821 251.08 temperature 30 1440 < th dose independent rect. 4 17
841 251.11 temperature 30 1440 < th dose independent rect. 6 15
901 251.20 temperature 30 1440 > th dose independent rect. 9 10