Os04g0586700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0586700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, RING-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.28 | 0.532 | 3.66 | 1.01 | 1.28 | -1.05 | 1.2 | 1.67 | -0.0708 | 1.45 | 26.25 | 1300 | -- | -- |
| 129.04 | 0.529 | 3.71 | 0.597 | 1.28 | -0.899 | 1.22 | -- | -0.131 | 1.44 | 26.06 | 1288 | -- | -- |
| 133.9 | 0.539 | 3.67 | 1.05 | 1.26 | -1.06 | -- | 2.18 | -0.102 | 1.52 | 26.76 | 1311 | -- | -- |
| 135.2 | 0.542 | 3.71 | 0.547 | 1.27 | -0.85 | -- | -- | -0.145 | 1.57 | 25.79 | 1328 | -- | -- |
| 197.63 | 0.658 | 3.7 | 0.552 | -- | -1.54 | -- | 0.641 | -0.13 | -- | 26.12 | 1710 | -- | -- |
| 161.27 | 0.595 | 3.73 | 0.296 | 1.14 | -- | 1.05 | -- | -0.205 | 1.43 | -- | -- | -- | -- |
| 165.73 | 0.603 | 3.73 | 0.26 | 1.14 | -- | -- | -- | -0.211 | 1.53 | -- | -- | -- | -- |
| 186.68 | 0.639 | 3.68 | 0.521 | -- | -1.54 | -- | -- | -0.0416 | -- | 24.45 | 1699 | -- | -- |
| 142.16 | 0.555 | 3.74 | -- | 1.26 | -0.736 | -- | -- | -0.272 | 1.5 | 27.1 | 1296 | -- | -- |
| 245.59 | 0.732 | 3.71 | 0.306 | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
| 167.51 | 0.605 | 3.73 | -- | 1.15 | -- | -- | -- | -0.24 | 1.54 | -- | -- | -- | -- |
| 193.69 | 0.65 | 3.69 | -- | -- | -1.46 | -- | -- | -0.105 | -- | 24.45 | 1699 | -- | -- |
| 248.06 | 0.735 | 3.72 | -- | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 2 | 126.19 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 10 | 127.40 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 12 | 127.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 13 | 127.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 18 | 128.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 19 | 128.05 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 29 | 128.06 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 40 | 128.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 51 | 128.33 | radiation | 20 | 4320 | < th | dose dependent | rect. | 24 | 7 |
| 56 | 128.34 | radiation | 20 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 58 | 128.35 | radiation | 40 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 78 | 128.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 112 | 128.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 116 | 128.71 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 133 | 128.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 142 | 128.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 144 | 128.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 161 | 129.13 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 218 | 129.42 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 346 | 129.93 | radiation | 10 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 391 | 130.03 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 406 | 130.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 470 | 130.18 | radiation | 10 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 545 | 130.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 561 | 130.29 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 568 | 130.31 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 571 | 130.31 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 620 | 130.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 636 | 130.41 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 848 | 130.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 854 | 130.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 860 | 130.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 873 | 130.71 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |