BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0586700 Os04g0586700|AK063488
(359 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0586700 Zinc finger, RING-type domain containing protein 431 e-121
Os02g0688800 Zinc finger, RING-type domain containing protein 205 5e-53
Os02g0743100 Zinc finger, RING-type domain containing protein 77 1e-14
Os12g0596200 Similar to RING-H2 protein 76 3e-14
Os06g0187300 75 1e-13
Os08g0445000 Similar to RING-H2 finger protein ATL5A 75 1e-13
Os03g0149800 Similar to RING-H2 finger protein ATL1D 74 2e-13
Os02g0820200 Zinc finger, RING-type domain containing protein 72 7e-13
Os02g0790600 Similar to RING-H2 finger protein ATL1R (RING-... 72 9e-13
Os05g0596500 Similar to RING-H2 finger protein ATL3I (YGHL1... 71 9e-13
Os04g0590900 Similar to RING-H2 finger protein ATL1B 71 1e-12
Os06g0233200 Similar to RING-H2 finger protein ATL1R (RING-... 71 1e-12
Os09g0376700 Zinc finger, RING-type domain containing protein 70 3e-12
Os08g0484200 Zinc finger, RING-type domain containing protein 69 6e-12
Os01g0213400 Zinc finger, RING-type domain containing protein 69 6e-12
Os03g0149700 Zinc finger, RING-type domain containing protein 69 6e-12
Os11g0610600 Similar to RING-H2 finger protein ATL2N 68 8e-12
Os06g0695900 Zinc finger, RING-type domain containing protein 68 1e-11
Os06g0167200 Similar to RING-H2 finger protein ATL1R (RING-... 68 1e-11
Os02g0832150 Zinc finger, RING-type domain containing protein 68 1e-11
Os02g0572350 Zinc finger, RING-type domain containing protein 67 2e-11
Os03g0188200 Zinc finger, RING-type domain containing protein 67 2e-11
AK064102 67 2e-11
AK109940 67 2e-11
Os02g0692000 Similar to RING finger family protein 67 2e-11
Os01g0213000 Zinc finger, RING-type domain containing protein 66 4e-11
Os07g0479100 Zinc finger, RING-type domain containing protein 66 4e-11
Os01g0311100 65 7e-11
Os01g0755700 Zinc finger, RING-type domain containing protein 65 9e-11
>Os04g0586700 Zinc finger, RING-type domain containing protein
Length = 359
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/359 (65%), Positives = 236/359 (65%)
Query: 1 MASTLXXXXXXXADPVTGSSDXXXXXXXXXXXXXXXXXXXXXXXXXIHXXXXXXXXXXXX 60
MASTL ADPVTGSSD IH
Sbjct: 1 MASTLSSPSPPSADPVTGSSDAASSFLPSLLIIAALLAFVLLASVSIHLLLRLLSRSSPP 60
Query: 61 XXXXXXXXXTRREVHNVEAADASPVRRNGVCEGKKEVVGDEKQRLIESLPLFTMXXXXXX 120
TRREVHNVEAADASPVRRNGVCEGKKEVVGDEKQRLIESLPLFTM
Sbjct: 61 PPPPPPLPRTRREVHNVEAADASPVRRNGVCEGKKEVVGDEKQRLIESLPLFTMASSLAA 120
Query: 121 XXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLPHPSI 180
DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLPHPSI
Sbjct: 121 LPKSSPDCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLPHPSI 180
Query: 181 SAILAAEQXXXXXXXXXXXXXXXXVEMGSVSNRSASTATGGNARPTYSLGTFDYHIDEEV 240
SAILAAEQ VEMGSVSNRSASTATGGNARPTYSLGTFDYHIDEEV
Sbjct: 181 SAILAAEQPPPPEPRSRDRSRSFRVEMGSVSNRSASTATGGNARPTYSLGTFDYHIDEEV 240
Query: 241 EAVVSRAAPMTTRSAAAVKEDKPAAEQSXXXXXXXXXXXXXXTRGWLREYVERLATXXXX 300
EAVVSRAAPMTTRSAAAVKEDKPAAEQS TRGWLREYVERLAT
Sbjct: 241 EAVVSRAAPMTTRSAAAVKEDKPAAEQSPPPPGEAVAEAAGATRGWLREYVERLATSASS 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXEEPWLWDAEAVRMSPPGTEEEETAFMVLYRWIAGV 359
EEPWLWDAEAVRMSPPGTEEEETAFMVLYRWIAGV
Sbjct: 301 LSSFSGRWSSRWSQSYQSHHSHSQEEPWLWDAEAVRMSPPGTEEEETAFMVLYRWIAGV 359
>Os02g0688800 Zinc finger, RING-type domain containing protein
Length = 373
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 127/272 (46%), Positives = 149/272 (54%), Gaps = 27/272 (9%)
Query: 98 VGDEKQRLIESLPLFTMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAACVD 157
V DEK+RLI SLPLFTM DCAVCLSPF +AELRLLPACRHAFHA+CVD
Sbjct: 119 VDDEKERLIASLPLFTMASALAALPKSSPDCAVCLSPFAPEAELRLLPACRHAFHASCVD 178
Query: 158 AWLRTTPSCPLCRATVTLPHPSI-----SAILAAEQXXXXXXXXXXXXXXXXVEMGSVSN 212
AWLRTTPSCPLCRATV+LPHP + +A A Q VE+GS+SN
Sbjct: 179 AWLRTTPSCPLCRATVSLPHPPLPTAAAAAASNAAQQDPLDSRSSNNSRSFRVEIGSISN 238
Query: 213 RSASTATGGNARPTYSLGTFDYHIDEEVEAVVSRAAPMTTRSAAAVKEDKPAAEQSXXXX 272
R +S A + R TYSLG+FDY +DEEVEAVVSR A +PAA +S
Sbjct: 239 RRSSAA--ADDRRTYSLGSFDYRVDEEVEAVVSRIA-------------RPAAAKSTTGS 283
Query: 273 XX----XXXXXXXXTRGWLREYVERLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEPW 328
+RGWLREYV+RLA+ E+ W
Sbjct: 284 VTPAPGEALAEAAGSRGWLREYVDRLAS--SASSLSGRWSGRWSARWSQSHHSNRQEDSW 341
Query: 329 LWDAEAVRMSPP-GTEEEETAFMVLYRWIAGV 359
WD EA MS P G +++E F+ LYRWI GV
Sbjct: 342 RWDPEAAVMSAPRGVDDDEPGFVTLYRWIVGV 373
>Os02g0743100 Zinc finger, RING-type domain containing protein
Length = 396
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 103 QRLIESLPLFTMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRT 162
Q I++LP+F DCAVCL F + LRLLP C HAFH C+D WL +
Sbjct: 128 QAFIDALPVFAYRDIVGGDKEPF-DCAVCLCEFDGEDRLRLLPVCGHAFHLHCIDTWLLS 186
Query: 163 TPSCPLCRATVTLPHPSISAIL 184
+CPLCR T+ +P +I +++
Sbjct: 187 NSTCPLCRGTLYVPGLTIESLM 208
>Os12g0596200 Similar to RING-H2 protein
Length = 310
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 40/62 (64%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLPHPSISAILAA 186
DCAVCL F ELR LP C HAFHA C+D WLR SCPLCRA V LP P S + AA
Sbjct: 103 DCAVCLLEFADGDELRALPLCAHAFHADCIDVWLRAHASCPLCRAAVALPPPVASPLRAA 162
Query: 187 EQ 188
+
Sbjct: 163 RR 164
>Os06g0187300
Length = 444
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 103 QRLIESLPLFTMXXXXXXXXXXXX--DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWL 160
Q I++LP+F DCAVCL F D +LRLLP C HAFH C+DAWL
Sbjct: 96 QTFIDALPVFVYRAVVGAGLRKDDPFDCAVCLCEFAGDDKLRLLPTCGHAFHVPCIDAWL 155
Query: 161 RTTPSCPLCRATV 173
+ +CP+CR +V
Sbjct: 156 LSHSTCPICRGSV 168
>Os08g0445000 Similar to RING-H2 finger protein ATL5A
Length = 501
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 40/71 (56%)
Query: 103 QRLIESLPLFTMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRT 162
Q I++LP+F DCAVCL F D LRLLP C HAFH C+D WL +
Sbjct: 128 QSFIDTLPVFLYGAVVGAGRKDPFDCAVCLCEFADDDRLRLLPKCSHAFHVDCIDTWLLS 187
Query: 163 TPSCPLCRATV 173
+CPLCR ++
Sbjct: 188 HSTCPLCRRSL 198
>Os03g0149800 Similar to RING-H2 finger protein ATL1D
Length = 300
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 42/79 (53%)
Query: 96 EVVGDEKQRLIESLPLFTMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAAC 155
EV G ++ +LP+ +CAVCLS F D L+LLP+C HAFH C
Sbjct: 90 EVGGGLDPDVVAALPVVKYRRAASGKSASPQECAVCLSEFVRDERLKLLPSCSHAFHIDC 149
Query: 156 VDAWLRTTPSCPLCRATVT 174
+D WL SCPLCR VT
Sbjct: 150 IDTWLHHNVSCPLCRTVVT 168
>Os02g0820200 Zinc finger, RING-type domain containing protein
Length = 320
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 106 IESLPLFTMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPS 165
I+SLP F +CAVC+S F + +RLLP+C H FH C+D WL+ +
Sbjct: 120 IQSLPAFRYRKAIKDTTADSSECAVCISEFQEEERVRLLPSCLHVFHVDCIDTWLQGNAN 179
Query: 166 CPLCRATV 173
CPLCRA +
Sbjct: 180 CPLCRAAI 187
>Os02g0790600 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 428
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 103 QRLIESLPLF---TMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAACVDAW 159
Q I++LP+F + DCAVCL F D +LRLLP C HAFH C+D W
Sbjct: 95 QAFIDALPVFLYRNVVGVGGEDGKDPFDCAVCLCEFAADDQLRLLPKCSHAFHLECIDTW 154
Query: 160 LRTTPSCPLCRATV 173
L + +CPLCR ++
Sbjct: 155 LLSHSTCPLCRRSL 168
>Os05g0596500 Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion
protein)
Length = 385
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 105 LIESLPLFTMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTP 164
+IESLP F +CAVCL+ F LRLLP CRHAFH CVD WL +
Sbjct: 103 VIESLPFFRFAALRGARQGL--ECAVCLARFDDADLLRLLPRCRHAFHLDCVDRWLESKA 160
Query: 165 SCPLCRATV 173
SCPLCRA V
Sbjct: 161 SCPLCRARV 169
>Os04g0590900 Similar to RING-H2 finger protein ATL1B
Length = 383
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTL 175
DC+VCL F+ LRLLP C HAFH C+D WL++ +CPLCRA +T
Sbjct: 156 DCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITF 204
>Os06g0233200 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 436
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 103 QRLIESLPLFTMXXXXXXXXXXXX----DCAVCLSPFTLDAELRLLPACRHAFHAACVDA 158
Q I++LP+F DCAVCL F + LRLLP C HAFH C+D
Sbjct: 161 QAFIDALPVFAYREIVVGGGGDGDKEPFDCAVCLCEFDAEDRLRLLPLCGHAFHLHCIDT 220
Query: 159 WLRTTPSCPLCRATVTLP 176
WL + +CPLCR + +P
Sbjct: 221 WLLSNSTCPLCRGVLFVP 238
>Os09g0376700 Zinc finger, RING-type domain containing protein
Length = 392
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 33/44 (75%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCR 170
DCAVCL F LRLLP C HAFHAAC+D WLR++ +CPLCR
Sbjct: 151 DCAVCLCEFDGGDRLRLLPLCGHAFHAACIDTWLRSSSTCPLCR 194
>Os08g0484200 Zinc finger, RING-type domain containing protein
Length = 413
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTL 175
+CAVCLS F D LRLLP C HAFHA C+DAWL + +CP+CRA +
Sbjct: 144 ECAVCLSEFDDDETLRLLPRCSHAFHADCIDAWLASHVTCPVCRANLAF 192
>Os01g0213400 Zinc finger, RING-type domain containing protein
Length = 237
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLP 176
DCAVCLS ++R LP CRH FH CVDAWLR+ +CPLCRA +P
Sbjct: 128 DCAVCLSELADGEKVRELPNCRHVFHVECVDAWLRSRTTCPLCRAEAEVP 177
>Os03g0149700 Zinc finger, RING-type domain containing protein
Length = 311
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 33/50 (66%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLP 176
+CAVCLS F +RLLP C HAFH C+D WL+ CP CR+ VTLP
Sbjct: 127 ECAVCLSEFVERERVRLLPNCSHAFHIDCIDTWLQGNARCPFCRSDVTLP 176
>Os11g0610600 Similar to RING-H2 finger protein ATL2N
Length = 405
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 33/48 (68%)
Query: 128 CAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTL 175
CAVCL+ F LRLLP CRHAFH C+D WLR +CPLCRA V +
Sbjct: 222 CAVCLTEFRDGETLRLLPRCRHAFHRGCIDTWLRAHVNCPLCRAPVQI 269
>Os06g0695900 Zinc finger, RING-type domain containing protein
Length = 398
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 105 LIESLPLFTMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTP 164
++ESLP+F +CAVCL F LRLLP CRH FH CVD WL
Sbjct: 96 VVESLPVFRFGALRGQKAGL--ECAVCLGRFEPTEALRLLPKCRHGFHVECVDTWLDAHS 153
Query: 165 SCPLCRATV 173
+CPLCR+ V
Sbjct: 154 TCPLCRSRV 162
>Os06g0167200 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 363
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 30/44 (68%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCR 170
DCAVCL F D LRLLP C HAFH C+D WL + +CPLCR
Sbjct: 130 DCAVCLCEFAGDDRLRLLPVCGHAFHIDCIDTWLLSNSTCPLCR 173
>Os02g0832150 Zinc finger, RING-type domain containing protein
Length = 217
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 102 KQRLIESLPLFTMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLR 161
K++ I++LP + +CA+CL+ F ELRLLP C HAFH +C+D WL
Sbjct: 109 KKKAIDALPTVSFALKQQQQQA---ECAICLAEFAGGEELRLLPHCGHAFHVSCIDTWLG 165
Query: 162 TTPSCPLCRATV 173
T +CP CRATV
Sbjct: 166 THATCPSCRATV 177
>Os02g0572350 Zinc finger, RING-type domain containing protein
Length = 325
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 32/50 (64%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLP 176
DC VCL F LRLLP C HAFH C+DAWLR +CPLCRA V P
Sbjct: 108 DCPVCLGEFRDGELLRLLPKCGHAFHVPCIDAWLRAHVNCPLCRAHVLHP 157
>Os03g0188200 Zinc finger, RING-type domain containing protein
Length = 353
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 16/87 (18%)
Query: 97 VVGDEKQRLI-ESLPLFTMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAAC 155
V GD K R+ +S PL +CAVCL+ F ELR+LPAC H FH C
Sbjct: 116 VYGDVKARMAAKSGPL---------------ECAVCLAEFADSDELRVLPACCHVFHPDC 160
Query: 156 VDAWLRTTPSCPLCRATVTLPHPSISA 182
+D WL +CPLCRA +T P S++A
Sbjct: 161 IDPWLAAAVTCPLCRANLTAPPVSLAA 187
>AK064102
Length = 357
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 33/50 (66%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLP 176
DCAVCL F +RLLP C H FHA C+D WLR +CPLCR+ V +P
Sbjct: 156 DCAVCLGEFRDGELVRLLPRCSHPFHAPCIDTWLRAHVNCPLCRSPVVVP 205
>AK109940
Length = 373
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 32/50 (64%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLP 176
DC VCL F LRLLP C HAFH C+DAWLR +CPLCRA V P
Sbjct: 156 DCPVCLGEFRDGELLRLLPKCGHAFHVPCIDAWLRAHVNCPLCRAHVLHP 205
>Os02g0692000 Similar to RING finger family protein
Length = 389
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTL 175
DC+VCL F LRLLP C HAFH C+D WL++ +CPLCR +
Sbjct: 163 DCSVCLGEFREGESLRLLPKCSHAFHVPCIDTWLKSHSNCPLCRCNIAF 211
>Os01g0213000 Zinc finger, RING-type domain containing protein
Length = 166
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 34/50 (68%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLP 176
+CAVCL +R LP C HAFHA CVDAWLR P+CPLCRA V +P
Sbjct: 100 ECAVCLGAVEEGETVRALPCCPHAFHARCVDAWLRLRPTCPLCRADVPVP 149
>Os07g0479100 Zinc finger, RING-type domain containing protein
Length = 249
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 39/79 (49%)
Query: 99 GDEKQRLIESLPLFTMXXXXXXXXXXXXDCAVCLSPFTLDAELRLLPACRHAFHAACVDA 158
G + LI +P T CAVCL F +R+LP C+H FHA C+D
Sbjct: 168 GGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDN 227
Query: 159 WLRTTPSCPLCRATVTLPH 177
WL SCPLCRA V + H
Sbjct: 228 WLFRHASCPLCRAGVHIDH 246
>Os01g0311100
Length = 249
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 32/51 (62%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATVTLPH 177
DCAVCL+ F + R LP C H FH C+DAW R +CPLCRA V P+
Sbjct: 146 DCAVCLAEFEAGDKARALPRCGHRFHVECIDAWFRENSTCPLCRADVEAPY 196
>Os01g0755700 Zinc finger, RING-type domain containing protein
Length = 238
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 127 DCAVCLSPFTLDAELRLLPACRHAFHAACVDAWLRTTPSCPLCRATV 173
+CA+CL +R+LPACRH FH AC+D WL ++ SCP+CRA V
Sbjct: 116 ECAICLGAMQEADAVRVLPACRHVFHVACIDKWLASSSSCPVCRAGV 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.128 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,236,946
Number of extensions: 237350
Number of successful extensions: 1005
Number of sequences better than 1.0e-10: 43
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 43
Length of query: 359
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 257
Effective length of database: 11,709,973
Effective search space: 3009463061
Effective search space used: 3009463061
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)