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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0213000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0371) R2 : 0.161
β1 : -1.19 (0.136) R2dD : 0.147 R2D : 0.103
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.385 (0.0792) R2dN8 : 0.0583 R2N8 : 0.0141
σ : 0.696
deviance : 221.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.97 0.659 3.43 -1.02 0.682 1.92 -0.371 2.09 -0.23 13 0.43 1554 -- --
198.45 0.656 3.42 -0.839 0.582 1.43 -0.831 -- -0.228 12.9 0.3636 1556 -- --
197.35 0.654 3.43 -1.07 0.719 2.07 -- 2.67 -0.227 13 0.4181 1555 -- --
201.11 0.66 3.42 -0.874 0.581 1.41 -- -- -0.229 13.1 0.3732 1556 -- --
206.07 0.669 3.47 -1.14 -- 1.72 -- 2.58 -0.276 -- 0.3713 1430 -- --
215.73 0.689 3.45 -1.16 0.251 -- -0.725 -- -0.377 12.8 -- -- -- --
217.85 0.691 3.45 -1.18 0.258 -- -- -- -0.38 13.5 -- -- -- --
206.79 0.67 3.42 -0.892 -- 1.16 -- -- -0.245 -- 0.54 1402 -- --
218.06 0.688 3.4 -- 0.719 1.95 -- -- -0.105 13.2 0.2562 1558 -- --
221.94 0.696 3.46 -1.19 -- -- -- -- -0.385 -- -- -- -- --
254.74 0.747 3.42 -- 0.279 -- -- -- -0.248 13.6 -- -- -- --
224.72 0.698 3.39 -- -- 1.61 -- -- -0.109 -- 0.29 1411 -- --
259.51 0.752 3.43 -- -- -- -- -- -0.253 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.22 temperature 30.0 720 < th dose dependent rect. 24 3
2 186.31 temperature 30.0 720 < th dose dependent rect. 24 1
11 189.54 radiation 10.0 720 < th dose independent rect. 21 9
12 189.64 temperature 30.0 270 < th dose dependent rect. 24 11
15 190.21 temperature 10.0 270 > th dose dependent rect. 3 13
34 192.57 radiation 10.0 270 < th dose independent rect. 20 12
38 192.71 temperature 20.0 720 < th dose independent rect. 1 1
48 193.19 temperature 10.0 720 > th dose dependent rect. 21 10
53 193.66 radiation 20.0 10 < th dose independent rect. 22 11
63 194.05 temperature 15.0 270 > th dose dependent rect. 21 19
64 194.09 temperature 10.0 720 > th dose dependent rect. 2 5
74 194.35 radiation 10.0 720 < th dose independent rect. 4 3
90 194.72 temperature 20.0 270 > th dose dependent sin 5 NA
94 194.83 temperature 30.0 10 < th dose dependent rect. 2 10
97 194.92 temperature 25.0 90 < th dose independent rect. 7 5
107 195.08 radiation 10.0 720 < th dose dependent rect. 21 9
122 195.20 temperature 25.0 90 > th dose independent rect. 4 12
141 195.44 temperature 30.0 270 < th dose dependent rect. 7 2
144 195.48 temperature 25.0 270 < th dose dependent rect. 24 19
171 195.80 radiation 1.0 1440 < th dose dependent rect. 17 6
173 195.81 temperature 15.0 720 > th dose dependent rect. 4 1
188 195.92 radiation 1.0 1440 < th dose dependent rect. 17 11
257 196.51 temperature 30.0 270 < th dose dependent sin 5 NA
270 196.65 humidity 80.0 90 > th dose independent rect. 22 9
300 196.87 temperature 25.0 90 > th dose independent rect. 24 16
310 196.93 temperature 25.0 90 > th dose independent rect. 24 18
320 197.01 temperature 25.0 90 > th dose independent rect. 22 20
337 197.13 temperature 15.0 10 > th dose dependent rect. 22 21
338 197.14 temperature 20.0 10 > th dose dependent rect. 3 16
355 197.22 radiation 30.0 90 < th dose dependent rect. 21 12
360 197.27 temperature 25.0 90 > th dose independent rect. 22 18
384 197.44 temperature 25.0 90 > th dose independent sin 2 NA
393 197.48 temperature 30.0 90 < th dose dependent rect. 7 14
401 197.51 temperature 25.0 720 < th dose dependent rect. 3 1
433 197.67 wind 1.0 90 > th dose independent rect. 12 13
443 197.74 temperature 25.0 90 < th dose independent rect. 1 11
449 197.77 temperature 25.0 270 < th dose independent rect. 7 2
455 197.78 temperature 30.0 10 < th dose dependent rect. 2 20
492 197.95 temperature 15.0 10 > th dose dependent rect. 23 17
493 197.96 temperature 30.0 10 < th dose dependent rect. 7 15
498 197.98 precipitation 0.1 90 < th dose independent rect. 12 13
500 197.98 precipitation 0.1 90 < th dose dependent rect. 12 13
507 198.00 radiation 40.0 10 < th dose dependent rect. 22 11
508 198.01 wind 1.0 270 > th dose independent rect. 7 13
524 198.07 temperature 10.0 90 > th dose independent rect. 1 11
525 198.07 atmosphere 995.0 90 > th dose independent rect. 1 11
526 198.07 atmosphere 1015.0 90 < th dose independent rect. 1 11
527 198.07 temperature 10.0 90 > th dose independent rect. 12 13
533 198.09 precipitation 0.1 90 < th dose independent rect. 1 11
536 198.09 precipitation 0.1 90 < th dose dependent rect. 1 11
544 198.11 temperature 25.0 90 < th dose independent rect. 7 14
574 198.23 humidity 50.0 90 > th dose independent rect. 1 11
588 198.28 wind 9.0 43200 < th dose independent rect. 24 1
596 198.30 humidity 50.0 90 > th dose dependent rect. 21 12
628 198.45 humidity 90.0 270 < th dose dependent rect. 3 1
632 198.46 radiation 1.0 1440 < th dose dependent sin 13 NA
636 198.47 wind 9.0 90 < th dose independent rect. 12 13
662 198.60 temperature 25.0 90 < th dose independent sin 1 NA
663 198.60 temperature 25.0 90 < th dose independent rect. 7 10
712 198.76 temperature 25.0 720 < th dose dependent sin 8 NA
729 198.80 temperature 25.0 90 < th dose independent rect. 7 12
743 198.83 humidity 90.0 270 < th dose independent rect. 3 1
753 198.85 radiation 10.0 90 < th dose independent rect. 22 15
763 198.87 humidity 90.0 90 < th dose dependent rect. 2 4
829 199.07 temperature 20.0 720 > th dose independent rect. 2 4
834 199.08 radiation 1.0 1440 < th dose independent rect. 17 6
847 199.12 humidity 80.0 90 < th dose independent rect. 2 4
855 199.14 temperature 20.0 720 > th dose dependent sin 9 NA
886 199.20 radiation 1.0 1440 < th dose dependent rect. 17 19
887 199.21 radiation 1.0 1440 < th dose independent rect. 17 11
893 199.23 temperature 20.0 720 > th dose independent rect. 22 9
896 199.23 precipitation 0.1 720 < th dose independent rect. 2 22
899 199.23 precipitation 0.1 720 < th dose dependent rect. 2 22
903 199.25 wind 5.0 14400 > th dose independent rect. 13 1
906 199.25 temperature 30.0 720 < th dose independent rect. 24 10
917 199.27 radiation 1.0 1440 > th dose independent rect. 17 2
939 199.32 wind 5.0 14400 < th dose independent rect. 13 1
941 199.32 radiation 1.0 720 < th dose dependent rect. 24 19
966 199.38 wind 9.0 90 < th dose independent rect. 1 11
973 199.39 radiation 10.0 4320 < th dose independent rect. 24 10
978 199.39 atmosphere 995.0 90 > th dose independent rect. 12 13
988 199.40 radiation 10.0 4320 < th dose independent rect. 5 5