Os01g0213400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os01g0213400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 536.9 | 1.09 | 7.89 | 1.99 | 3.16 | -2.27 | 3.17 | 1.08 | 1.08 | 18.5 | 68.5 | 1210 | -- | -- |
| 538.69 | 1.08 | 7.89 | 1.91 | 3.16 | -2.22 | 3.12 | -- | 1.06 | 18.5 | 68.77 | 1194 | -- | -- |
| 560.96 | 1.1 | 7.89 | 1.97 | 3.21 | -2.3 | -- | 1.29 | 1.08 | 18.6 | 68 | 1189 | -- | -- |
| 563.89 | 1.11 | 7.91 | 1.83 | 3.21 | -2.22 | -- | -- | 1.06 | 18.6 | 68.17 | 1185 | -- | -- |
| 1071.59 | 1.52 | 7.81 | 1.91 | -- | -2.38 | -- | 1.07 | 1.05 | -- | 68.61 | 1282 | -- | -- |
| 713.89 | 1.25 | 7.9 | 1.39 | 3.24 | -- | 3.28 | -- | 1.05 | 17.9 | -- | -- | -- | -- |
| 740.35 | 1.27 | 7.9 | 1.36 | 3.26 | -- | -- | -- | 1.06 | 17.9 | -- | -- | -- | -- |
| 1073.58 | 1.53 | 7.84 | 1.78 | -- | -2.32 | -- | -- | 1.01 | -- | 68.64 | 1289 | -- | -- |
| 646.41 | 1.18 | 7.93 | -- | 3.16 | -1.96 | -- | -- | 0.847 | 18.5 | 67 | 1187 | -- | -- |
| 1289.78 | 1.68 | 7.85 | 1.26 | -- | -- | -- | -- | 0.985 | -- | -- | -- | -- | -- |
| 789.35 | 1.31 | 7.93 | -- | 3.23 | -- | -- | -- | 0.909 | 17.9 | -- | -- | -- | -- |
| 1154.34 | 1.58 | 7.88 | -- | -- | -2.07 | -- | -- | 0.814 | -- | 68.18 | 1282 | -- | -- |
| 1331.97 | 1.7 | 7.88 | -- | -- | -- | -- | -- | 0.844 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 544.76 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 11 | 555.48 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 21 | 561.06 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 23 | 561.16 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 24 | 561.25 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 26 | 561.29 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 27 | 561.37 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 34 | 561.83 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 36 | 561.97 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 39 | 561.98 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 106 | 563.10 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 126 | 563.44 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 142 | 563.75 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 151 | 563.85 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 160 | 564.10 | humidity | 80 | 1440 | < th | dose dependent | sin | 20 | NA |
| 176 | 564.54 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 195 | 565.21 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 10 |
| 238 | 567.25 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 244 | 567.29 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 258 | 567.67 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 276 | 568.15 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 277 | 568.21 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 297 | 568.38 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 301 | 568.45 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 326 | 569.06 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 466 | 571.51 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 540 | 572.55 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 541 | 572.55 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 626 | 572.96 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 666 | 573.09 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 15 |
| 667 | 573.10 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 682 | 573.25 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 685 | 573.32 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 723 | 573.67 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 754 | 574.02 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 808 | 574.25 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 837 | 574.60 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 847 | 574.68 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 869 | 574.79 | humidity | 50 | 1440 | > th | dose dependent | sin | 22 | NA |
| 879 | 574.84 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 955 | 575.67 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 963 | 575.82 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 984 | 576.13 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 993 | 576.25 | humidity | 70 | 1440 | < th | dose independent | sin | 17 | NA |
| 1000 | 576.29 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 22 |