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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0596500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.46 (0.0333) R2 : 0.488
β1 : 0.946 (0.123) R2dD : 0.0639 R2D : 2.59e-05
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.69 (0.131) R2dE : 0.503 R2E : 0.422
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.225 (0.0724) R2dN8 : 0.0132 R2N8 : -0.0298
σ : 0.621
deviance : 177.51
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.94
memory length : 307
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.7
open length of G : 16.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
161.65 0.597 5.46 1.22 0.655 -2.87 1.52 2.14 0.274 21 22.97 412 22.5 17.3
163.78 0.596 5.48 0.993 0.608 -2.76 1.42 -- 0.216 20.6 22.5 379 22.7 17.5
169.42 0.606 5.45 1.18 0.624 -2.93 -- 2.27 0.276 20.7 22.87 390 22.5 17.4
171.07 0.609 5.49 0.909 0.528 -2.82 -- -- 0.183 20.6 22.35 369 23.1 17
181.64 0.628 5.44 1.26 -- -2.87 -- 2.08 0.305 -- 21.64 324 22.9 17.3
265.23 0.763 5.55 0.467 1.05 -- 1.19 -- -0.135 1.03 -- -- -- --
270.99 0.771 5.56 0.423 1.05 -- -- -- -0.142 1.21 -- -- -- --
177.51 0.621 5.46 0.946 -- -2.69 -- -- 0.225 -- 20.94 307 23.7 16.6
190.35 0.643 5.51 -- 0.524 -2.42 -- -- 0.0637 21.4 22.48 336 23.3 17.1
338.87 0.86 5.54 0.464 -- -- -- -- -0.121 -- -- -- -- --
275.71 0.777 5.57 -- 1.05 -- -- -- -0.189 1.22 -- -- -- --
196.02 0.652 5.5 -- -- -2.56 -- -- 0.0565 -- 21.15 318 0.0326 15.9
344.54 0.866 5.55 -- -- -- -- -- -0.172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.11 temperature 20 270 > th dose dependent rect. 24 17
3 171.52 temperature 25 270 > th dose dependent rect. 9 8
19 174.41 temperature 10 270 > th dose dependent rect. 1 16
41 176.50 temperature 25 270 > th dose dependent sin 0 NA
97 181.03 temperature 25 90 > th dose dependent sin 20 NA
174 185.95 temperature 30 270 < th dose independent rect. 5 18
178 186.21 temperature 25 270 > th dose dependent rect. 9 23
189 186.48 radiation 30 270 < th dose dependent rect. 13 12
238 187.63 temperature 25 270 > th dose dependent no NA NA
270 187.95 radiation 20 270 < th dose independent rect. 13 12
375 190.47 radiation 20 270 < th dose dependent sin 18 NA
423 191.95 temperature 30 270 < th dose independent rect. 15 23
440 192.19 radiation 40 1440 < th dose dependent rect. 18 12
452 192.36 radiation 30 1440 < th dose dependent rect. 18 8
457 192.44 radiation 1 270 > th dose dependent sin 16 NA
459 192.44 temperature 25 1440 > th dose dependent rect. 6 13
470 192.56 temperature 25 1440 > th dose dependent rect. 17 1
477 192.60 temperature 25 1440 > th dose dependent rect. 15 3
481 192.61 radiation 10 270 > th dose independent sin 17 NA
491 192.67 radiation 20 270 < th dose dependent rect. 6 19
497 192.71 temperature 30 270 < th dose independent rect. 5 9
523 192.83 temperature 30 1440 < th dose independent rect. 9 7
529 192.86 temperature 25 1440 > th dose dependent sin 22 NA
539 192.90 temperature 30 1440 < th dose independent rect. 7 9
540 192.90 temperature 30 1440 < th dose independent rect. 19 21
564 193.00 temperature 25 1440 > th dose dependent rect. 13 23
565 193.01 humidity 80 270 < th dose independent rect. 11 7
571 193.03 temperature 30 1440 < th dose independent rect. 1 15
668 193.42 temperature 25 720 > th dose dependent rect. 20 15
671 193.44 temperature 25 1440 > th dose dependent no NA NA
682 193.48 temperature 25 1440 > th dose dependent rect. 11 23
695 193.53 temperature 25 1440 > th dose dependent rect. 9 23
697 193.54 temperature 30 1440 > th dose independent rect. 9 7
735 193.68 temperature 25 1440 > th dose dependent rect. 17 23
736 193.69 temperature 30 90 < th dose independent rect. 5 23
808 193.98 radiation 10 270 > th dose independent rect. 12 6
897 194.34 humidity 80 270 < th dose independent rect. 12 5
900 194.36 radiation 10 270 < th dose independent sin 17 NA
934 194.60 temperature 30 1440 < th dose independent rect. 13 3
970 194.82 wind 7 43200 < th dose independent rect. 10 4