Os02g0688800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os02g0688800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.16 | 0.634 | 5.36 | 0.865 | 4.16 | 0.598 | 0.0335 | 0.383 | -0.189 | 6.25 | 24.36 | 271 | -- | -- |
| 182.59 | 0.629 | 5.35 | 0.993 | 4.16 | 0.617 | 0.195 | -- | -0.147 | 6.25 | 24.4 | 274 | -- | -- |
| 182.16 | 0.629 | 5.36 | 0.863 | 4.16 | 0.598 | -- | 0.392 | -0.191 | 6.25 | 24.38 | 272 | -- | -- |
| 182.68 | 0.63 | 5.35 | 0.994 | 4.16 | 0.617 | -- | -- | -0.148 | 6.25 | 24.4 | 272 | -- | -- |
| 707.31 | 1.24 | 5.36 | 1.71 | -- | 3.12 | -- | -1.78 | 0.209 | -- | 26.5 | 376 | -- | -- |
| 203.67 | 0.669 | 5.41 | 0.772 | 4.43 | -- | 0.291 | -- | -0.446 | 6.16 | -- | -- | -- | -- |
| 203.88 | 0.669 | 5.41 | 0.775 | 4.43 | -- | -- | -- | -0.447 | 6.17 | -- | -- | -- | -- |
| 672.85 | 1.21 | 5.29 | 1.66 | -- | 2.9 | -- | -- | 0.546 | -- | 25.8 | 385 | -- | -- |
| 207.24 | 0.67 | 5.38 | -- | 4.23 | 0.483 | -- | -- | -0.316 | 6.23 | 24.48 | 274 | -- | -- |
| 1220.83 | 1.63 | 5.49 | 0.898 | -- | -- | -- | -- | -0.349 | -- | -- | -- | -- | -- |
| 219.69 | 0.693 | 5.43 | -- | 4.44 | -- | -- | -- | -0.534 | 6.16 | -- | -- | -- | -- |
| 744.5 | 1.27 | 5.33 | -- | -- | 2.83 | -- | -- | 0.357 | -- | 25.8 | 386 | -- | -- |
| 1242.11 | 1.65 | 5.51 | -- | -- | -- | -- | -- | -0.449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 2 | 174.73 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 16 | 176.62 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 19 |
| 25 | 177.13 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 10 |
| 61 | 179.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 86 | 180.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 88 | 180.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 91 | 180.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 113 | 180.78 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 3 |
| 117 | 180.86 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 128 | 181.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 135 | 181.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 142 | 181.27 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 20 |
| 175 | 181.65 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 9 |
| 307 | 182.89 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 14 |
| 367 | 183.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 368 | 183.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 375 | 183.47 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 408 | 183.73 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 448 | 183.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 450 | 183.99 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 504 | 184.35 | temperature | 25 | 270 | > th | dose independent | sin | 9 | NA |
| 506 | 184.35 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 23 |
| 508 | 184.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 540 | 184.56 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 23 |
| 546 | 184.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 557 | 184.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 565 | 184.71 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 636 | 185.13 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 22 |
| 696 | 185.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 708 | 185.44 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 23 |
| 726 | 185.52 | temperature | 30 | 30 | < th | dose independent | rect. | 16 | 21 |
| 730 | 185.55 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 23 |
| 798 | 185.82 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 831 | 185.94 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 889 | 186.19 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 18 |
| 964 | 186.47 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 17 |