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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0743100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.83 (0.0194) R2 : 0.228
β1 : 0.705 (0.071) R2dD : 0.173 R2D : 0.191
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.167 (0.0414) R2dN8 : 0.037 R2N8 : 0.0555
σ : 0.364
deviance : 60.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.12 0.339 9.81 0.782 0.22 -0.342 -0.658 -0.0678 -0.115 4.36 20.3 280 -- --
52.14 0.336 9.81 0.793 0.222 -0.334 -0.631 -- -0.113 4.35 20.3 279 -- --
53.16 0.34 9.81 0.819 0.22 -0.315 -- 0.143 -0.106 4.39 20.31 262 -- --
53.23 0.34 9.81 0.797 0.217 -0.331 -- -- -0.11 4.35 20.3 272 -- --
55.63 0.347 9.81 0.843 -- -0.355 -- 0.116 -0.0982 -- 20.3 241 -- --
55.77 0.35 9.83 0.688 0.271 -- -0.604 -- -0.178 4.18 -- -- -- --
56.79 0.353 9.82 0.694 0.268 -- -- -- -0.174 4.19 -- -- -- --
55.65 0.347 9.81 0.818 -- -0.383 -- -- -0.097 -- 20.22 247 -- --
68.67 0.386 9.84 -- 0.255 -0.14 -- -- -0.226 3.92 20.59 160 -- --
60.67 0.364 9.83 0.705 -- -- -- -- -0.167 -- -- -- -- --
69.48 0.39 9.84 -- 0.281 -- -- -- -0.252 4.14 -- -- -- --
72.11 0.396 9.85 -- -- -0.157 -- -- -0.229 -- 20.5 150 -- --
73.77 0.401 9.84 -- -- -- -- -- -0.245 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.01 temperature 20 270 > th dose independent rect. 22 14
6 50.56 temperature 10 270 > th dose dependent rect. 23 13
7 50.66 temperature 20 270 > th dose independent rect. 16 20
8 50.68 temperature 20 270 > th dose independent rect. 18 18
15 50.75 temperature 15 270 > th dose dependent rect. 17 19
30 50.98 radiation 20 10 > th dose dependent rect. 10 2
33 51.01 radiation 30 10 > th dose independent rect. 10 2
47 51.18 temperature 20 270 > th dose independent rect. 6 22
58 51.31 radiation 40 10 < th dose independent rect. 5 13
61 51.33 wind 5 10 > th dose dependent rect. 12 1
75 51.47 temperature 20 270 < th dose independent sin 7 NA
94 51.58 temperature 20 270 > th dose independent sin 8 NA
101 51.60 temperature 30 270 < th dose dependent rect. 21 11
104 51.64 temperature 15 270 > th dose dependent sin 9 NA
114 51.68 temperature 20 270 < th dose independent rect. 23 11
115 51.68 radiation 40 10 > th dose independent rect. 14 22
117 51.70 temperature 30 90 < th dose dependent rect. 5 6
138 51.71 temperature 30 270 < th dose dependent sin 9 NA
139 51.71 radiation 30 10 > th dose dependent rect. 14 22
141 51.72 temperature 20 270 < th dose independent rect. 1 9
167 51.75 temperature 20 270 < th dose independent rect. 3 6
253 51.88 temperature 30 90 < th dose dependent sin 7 NA
278 51.95 radiation 1 30 > th dose independent rect. 12 23
294 51.99 radiation 1 30 > th dose independent rect. 12 21
322 52.02 temperature 30 270 < th dose dependent rect. 3 5
329 52.03 temperature 20 270 < th dose independent rect. 23 22
338 52.05 radiation 40 90 > th dose dependent rect. 9 3
342 52.06 radiation 1 30 > th dose independent sin 12 NA
344 52.06 temperature 20 270 < th dose independent rect. 16 18
346 52.06 radiation 20 90 > th dose dependent rect. 10 2
356 52.08 radiation 1 30 > th dose independent rect. 15 17
359 52.08 temperature 20 270 < th dose independent rect. 1 20
360 52.08 temperature 20 270 < th dose independent rect. 21 21
367 52.08 radiation 40 90 > th dose dependent rect. 14 22
371 52.09 temperature 20 270 < th dose independent rect. 23 19
389 52.10 atmosphere 1015 720 < th dose independent rect. 24 19
422 52.11 temperature 30 90 < th dose dependent rect. 5 4
495 52.21 temperature 25 270 > th dose dependent rect. 7 4
497 52.21 temperature 20 270 < th dose dependent rect. 23 11
511 52.23 radiation 1 30 < th dose independent sin 12 NA
521 52.23 temperature 20 270 < th dose dependent rect. 3 6
522 52.23 temperature 20 270 < th dose dependent rect. 1 8
536 52.24 temperature 30 270 < th dose dependent rect. 5 1
541 52.24 radiation 1 30 < th dose dependent rect. 11 18
545 52.25 temperature 20 270 < th dose independent rect. 5 1
562 52.26 temperature 15 720 > th dose independent rect. 7 5
564 52.26 temperature 20 270 < th dose independent rect. 1 16
581 52.27 radiation 40 10 < th dose independent rect. 5 21
590 52.27 radiation 1 30 < th dose dependent rect. 13 16
593 52.28 temperature 20 270 > th dose independent no NA NA
639 52.31 radiation 10 4320 < th dose independent rect. 16 14
680 52.33 temperature 20 270 < th dose independent no NA NA
699 52.34 radiation 1 30 < th dose dependent sin 12 NA
708 52.34 radiation 1 30 < th dose dependent rect. 21 23
719 52.35 temperature 20 270 < th dose dependent rect. 1 21
720 52.35 radiation 1 30 < th dose dependent rect. 16 22
726 52.36 temperature 25 270 > th dose dependent rect. 9 1
735 52.37 radiation 1 30 < th dose dependent no NA NA
750 52.37 radiation 1 30 < th dose dependent rect. 13 23
762 52.39 wind 1 270 > th dose independent rect. 4 2
780 52.40 radiation 1 30 < th dose dependent rect. 16 13
791 52.41 radiation 10 4320 < th dose independent rect. 16 1
792 52.41 radiation 10 4320 < th dose independent rect. 16 3
794 52.41 radiation 10 4320 < th dose independent rect. 16 6
800 52.41 radiation 40 10 > th dose dependent sin 3 NA
839 52.43 temperature 20 270 > th dose independent rect. 21 23
866 52.44 temperature 20 30 > th dose independent rect. 18 11
867 52.44 temperature 20 270 > th dose independent rect. 7 13
883 52.45 wind 5 10 < th dose independent rect. 5 13
900 52.46 temperature 25 270 > th dose independent rect. 8 1
901 52.46 radiation 1 30 > th dose independent rect. 17 15
975 52.47 temperature 20 720 > th dose independent rect. 16 12
989 52.48 wind 1 90 > th dose independent rect. 4 4