Os06g0167200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).
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Os06g0167200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.23 | 0.611 | 8.19 | -1.12 | 1.46 | 1.94 | 0.527 | -4.22 | -0.637 | 7.4 | 25.78 | 1721 | -- | -- |
| 176.42 | 0.619 | 8.12 | -0.181 | 1.52 | 1.71 | 0.54 | -- | -0.454 | 7.39 | 25.89 | 1782 | -- | -- |
| 169.98 | 0.607 | 8.2 | -1.14 | 1.47 | 1.96 | -- | -4.37 | -0.643 | 7.37 | 25.8 | 1720 | -- | -- |
| 174.05 | 0.614 | 8.07 | -0.107 | 1.34 | 1.45 | -- | -- | -0.409 | 7.48 | 25.6 | 1604 | -- | -- |
| 274 | 0.771 | 8.17 | -0.482 | -- | 1.39 | -- | -1.48 | -0.488 | -- | 25.7 | 2823 | -- | -- |
| 250.25 | 0.742 | 8.05 | 0.343 | 1.3 | -- | 0.585 | -- | -0.286 | 7.44 | -- | -- | -- | -- |
| 251.19 | 0.742 | 8.05 | 0.356 | 1.3 | -- | -- | -- | -0.288 | 7.41 | -- | -- | -- | -- |
| 261.48 | 0.753 | 8.12 | -0.103 | -- | 1.39 | -- | -- | -0.453 | -- | 24.85 | 1380 | -- | -- |
| 174.33 | 0.615 | 8.07 | -- | 1.36 | 1.44 | -- | -- | -0.402 | 7.5 | 25.6 | 1613 | -- | -- |
| 340.84 | 0.863 | 8.08 | 0.377 | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
| 254.53 | 0.746 | 8.06 | -- | 1.3 | -- | -- | -- | -0.327 | 7.39 | -- | -- | -- | -- |
| 261.75 | 0.754 | 8.11 | -- | -- | 1.36 | -- | -- | -0.431 | -- | 24.95 | 1384 | -- | -- |
| 344.58 | 0.866 | 8.09 | -- | -- | -- | -- | -- | -0.308 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 11 | 170.84 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 33 | 171.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 79 | 171.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 90 | 171.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 107 | 171.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 126 | 171.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 175 | 171.64 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 193 | 171.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 387 | 177.61 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 406 | 177.92 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 411 | 178.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 412 | 178.03 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 427 | 178.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 431 | 178.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 446 | 178.14 | temperature | 25 | 720 | > th | dose dependent | sin | 10 | NA |
| 466 | 178.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 468 | 178.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 474 | 178.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 477 | 178.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 481 | 178.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 503 | 178.43 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 519 | 178.44 | temperature | 30 | 1440 | > th | dose independent | sin | 19 | NA |
| 551 | 178.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 552 | 178.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 557 | 178.77 | temperature | 30 | 1440 | < th | dose independent | sin | 20 | NA |
| 600 | 179.09 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 698 | 179.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 699 | 179.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 706 | 179.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 707 | 179.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 715 | 179.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 716 | 179.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 722 | 179.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 724 | 179.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 743 | 179.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 745 | 179.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 747 | 179.18 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 758 | 179.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 761 | 179.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 762 | 179.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 789 | 179.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 824 | 179.24 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 825 | 179.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 828 | 179.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 832 | 179.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 835 | 179.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 843 | 179.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 879 | 179.60 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |