Os06g0233200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).
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Os06g0233200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.52 | 0.353 | 11.2 | -0.549 | 0.524 | 0.724 | 0.88 | -1.34 | -0.282 | 5.19 | 24.99 | 2590 | -- | -- |
| 56.25 | 0.349 | 11.2 | -0.31 | 0.534 | 0.636 | 0.824 | -- | -0.355 | 5.17 | 24.7 | 11034 | -- | -- |
| 58.44 | 0.356 | 11.2 | -0.551 | 0.523 | 0.733 | -- | -1.34 | -0.28 | 5.26 | 25.14 | 2619 | -- | -- |
| 58.16 | 0.355 | 11.2 | -0.259 | 0.531 | 0.625 | -- | -- | -0.379 | 4.96 | 24.8 | 9800 | -- | -- |
| 72.32 | 0.396 | 11.2 | -0.455 | -- | 0.741 | -- | -0.836 | -0.29 | -- | 23.9 | 2685 | -- | -- |
| 69.95 | 0.392 | 11.2 | 0.0187 | 0.563 | -- | 0.944 | -- | -0.136 | 4.62 | -- | -- | -- | -- |
| 72.32 | 0.398 | 11.2 | 0.0132 | 0.57 | -- | -- | -- | -0.141 | 4.63 | -- | -- | -- | -- |
| 73.02 | 0.398 | 11.2 | -0.273 | -- | 0.677 | -- | -- | -0.387 | -- | 24.4 | 9901 | -- | -- |
| 59.52 | 0.359 | 11.2 | -- | 0.523 | 0.573 | -- | -- | -0.335 | 4.9 | 26.45 | 9821 | -- | -- |
| 89.58 | 0.442 | 11.2 | 0.035 | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
| 72.32 | 0.398 | 11.2 | -- | 0.57 | -- | -- | -- | -0.142 | 4.63 | -- | -- | -- | -- |
| 73.62 | 0.4 | 11.2 | -- | -- | 0.615 | -- | -- | -0.192 | -- | 24 | 2679 | -- | -- |
| 89.61 | 0.442 | 11.2 | -- | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.05 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 2 | 54.06 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 3 | 54.07 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 8 | 54.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 10 | 54.60 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 11 | 54.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 54.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 14 | 54.66 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 15 | 54.67 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 17 | 54.69 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 39 | 54.78 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 50 | 54.82 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 61 | 54.86 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 63 | 54.86 | humidity | 90 | 43200 | > th | dose dependent | sin | 18 | NA |
| 65 | 54.87 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 77 | 54.88 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 90 | 54.90 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 95 | 54.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 19 |
| 100 | 54.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 111 | 54.94 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 125 | 54.95 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 132 | 54.97 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 146 | 54.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 149 | 54.98 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 153 | 54.98 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 14 |
| 157 | 54.99 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 158 | 54.99 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 163 | 54.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 21 |
| 177 | 55.01 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 187 | 55.01 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 188 | 55.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 191 | 55.01 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 198 | 55.02 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 210 | 55.02 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 221 | 55.03 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 235 | 55.03 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 249 | 55.04 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 255 | 55.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 271 | 55.04 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 289 | 55.04 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 296 | 55.04 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 299 | 55.05 | temperature | 20 | 43200 | > th | dose independent | sin | 11 | NA |
| 343 | 55.06 | temperature | 20 | 43200 | > th | dose independent | sin | 9 | NA |
| 346 | 55.06 | temperature | 20 | 43200 | < th | dose independent | sin | 8 | NA |
| 401 | 55.07 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 402 | 55.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 439 | 55.07 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 17 |
| 448 | 55.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 21 |
| 499 | 55.08 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 16 |
| 515 | 55.08 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 589 | 55.10 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 613 | 55.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 635 | 55.10 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 737 | 55.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 771 | 55.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 836 | 55.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 841 | 55.14 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 842 | 55.14 | temperature | 20 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 857 | 55.14 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 887 | 55.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 20 |
| 903 | 55.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 929 | 55.15 | temperature | 20 | 43200 | > th | dose independent | rect. | 2 | 1 |