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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0729900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0338) R2 : 0.078
β1 : 0.769 (0.124) R2dD : 0.0807 R2D : 0.0715
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.113 (0.0723) R2dN8 : 0.00657 R2N8 : -0.00262
σ : 0.635
deviance : 184.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.26 0.606 3.29 0.771 0.302 -0.394 0.733 -2.2 0.0513 20.4 1004 4584 -- --
171.35 0.61 3.27 0.838 0.273 -0.517 0.685 -- 0.0521 20.3 1004 4417 -- --
167.56 0.603 3.29 0.729 0.303 -0.401 -- -2.47 0.0575 20.2 1004 5093 -- --
172.94 0.612 3.28 0.823 0.292 -0.537 -- -- 0.0301 20.3 1004 4413 -- --
172.61 0.612 3.29 0.727 -- -0.41 -- -2.41 0.0514 -- 1004 5092 -- --
178.49 0.626 3.26 0.792 0.297 -- 0.712 -- 0.115 20.3 -- -- -- --
180.06 0.628 3.26 0.771 0.297 -- -- -- 0.116 20.3 -- -- -- --
177.53 0.621 3.26 0.858 -- -0.542 -- -- 0.0591 -- 1003 10336 -- --
189.75 0.645 3.3 -- 0.301 -0.276 -- -- -0.0603 20.2 1005 3907 -- --
184.93 0.635 3.25 0.769 -- -- -- -- 0.113 -- -- -- -- --
195.73 0.654 3.28 -- 0.293 -- -- -- 0.03 20.4 -- -- -- --
194.73 0.652 3.29 -- -- -0.271 -- -- -0.0619 -- 1005 3907 -- --
200.52 0.661 3.27 -- -- -- -- -- 0.0272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.11 wind 5 14400 < th dose independent rect. 12 3
3 165.17 wind 5 14400 > th dose independent rect. 13 2
5 165.33 wind 5 14400 < th dose independent rect. 11 8
6 165.40 wind 5 14400 < th dose independent rect. 11 6
8 165.57 wind 5 14400 > th dose independent rect. 11 8
10 165.61 atmosphere 1005 4320 > th dose independent rect. 24 1
13 165.66 wind 5 14400 > th dose independent rect. 11 6
29 166.03 atmosphere 1005 4320 < th dose independent rect. 24 1
37 166.18 atmosphere 1005 4320 > th dose independent rect. 20 6
40 166.19 humidity 90 1440 > th dose independent rect. 1 13
41 166.21 humidity 90 1440 < th dose independent rect. 24 14
52 166.31 wind 7 43200 > th dose dependent rect. 18 1
56 166.34 humidity 90 1440 < th dose independent rect. 10 1
58 166.34 atmosphere 1010 4320 < th dose dependent rect. 24 1
63 166.39 humidity 90 1440 > th dose independent rect. 1 8
74 166.47 humidity 90 1440 > th dose independent rect. 4 4
78 166.48 atmosphere 1005 4320 < th dose independent rect. 20 7
86 166.51 humidity 90 1440 > th dose independent rect. 1 10
93 166.54 humidity 90 1440 < th dose independent rect. 24 11
111 166.58 atmosphere 1005 4320 > th dose independent rect. 20 15
117 166.60 atmosphere 1005 4320 > th dose independent sin 12 NA
121 166.61 atmosphere 1005 4320 > th dose independent rect. 20 1
131 166.62 atmosphere 1005 4320 < th dose independent rect. 20 15
148 166.65 wind 7 30 < th dose dependent rect. 4 20
164 166.69 atmosphere 1005 4320 < th dose independent sin 12 NA
168 166.69 atmosphere 1005 4320 < th dose independent rect. 17 18
222 166.78 humidity 90 1440 < th dose independent rect. 2 7
304 166.87 humidity 90 1440 > th dose dependent rect. 3 5
344 166.90 humidity 90 1440 > th dose dependent rect. 3 11
409 166.96 atmosphere 1005 4320 < th dose independent rect. 8 20
412 166.96 atmosphere 1005 4320 < th dose independent rect. 8 22
444 166.98 humidity 90 1440 > th dose dependent rect. 3 7
455 166.99 atmosphere 1005 4320 < th dose independent rect. 5 23
471 167.00 atmosphere 1005 4320 > th dose independent rect. 9 21
476 167.00 atmosphere 1005 4320 < th dose independent rect. 24 23
479 167.01 atmosphere 1005 4320 < th dose independent no NA NA
484 167.01 atmosphere 1005 4320 > th dose independent rect. 9 19
513 167.02 atmosphere 1005 4320 < th dose independent rect. 3 23
545 167.04 atmosphere 1005 4320 > th dose independent rect. 5 23
548 167.05 atmosphere 1005 4320 > th dose independent no NA NA
559 167.05 humidity 80 1440 > th dose dependent rect. 24 12
578 167.07 atmosphere 1005 4320 > th dose independent rect. 3 23
580 167.07 atmosphere 1005 4320 > th dose independent rect. 24 23
791 167.26 wind 3 14400 > th dose dependent rect. 12 3
793 167.27 atmosphere 1005 4320 < th dose independent rect. 20 2
838 167.32 wind 9 43200 < th dose independent rect. 18 2
847 167.32 atmosphere 1005 4320 < th dose dependent rect. 13 1
866 167.35 humidity 80 1440 > th dose dependent rect. 24 14
881 167.37 wind 3 14400 > th dose dependent rect. 11 5
895 167.38 atmosphere 1005 4320 < th dose dependent rect. 4 1
908 167.39 atmosphere 1000 30 > th dose independent rect. 4 20
963 167.46 humidity 90 1440 > th dose independent sin 5 NA
980 167.46 humidity 90 1440 > th dose dependent rect. 2 17