FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0478000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.38 (0.0462) R2 : 0.927
β1 : -1.92 (0.169) R2dD : 0.0217 R2D : 0.0348
β2 : 8.6 (0.12) R2dC : 0.867 R2C : 0.675
β3 : -5.12 (0.142) R2dE : 0.22 R2E : 0.0279
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.5 (0.0988) R2dN8 : 0.00548 R2N8 : 0.0017
σ : 0.865
deviance : 344.54
__
_____
C
peak time of C : 15.8
E
wheather : temperature
threshold : 11.83
memory length : 245
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.94
open length of G : 6.14

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
327.99 0.851 7.4 -2.03 8.66 -5.1 0.829 -3.3 0.439 15.8 10.1 255 4.98 6.03
345.99 0.866 7.39 -1.96 8.69 -5.23 0.444 -- 0.473 15.7 10.31 254 4.92 6.1
329.46 0.845 7.4 -2 8.62 -5.09 -- -2.98 0.46 15.8 10.63 250 4.95 6.07
344.54 0.865 7.38 -1.92 8.6 -5.12 -- -- 0.5 15.8 11.83 245 4.94 6.14
2208.95 2.19 7.4 -1.57 -- -5.11 -- -0.633 0.365 -- -29.69 7 2.72 9.2
663.54 1.21 7.51 -2.2 8.61 -- 0.374 -- 0.315 17.3 -- -- -- --
663.88 1.21 7.51 -2.2 8.61 -- -- -- 0.316 17.3 -- -- -- --
1961.25 2.06 7.27 -2.15 -- -5.25 -- -- 0.709 -- -71.68 11 1.68 9.32
437.57 0.974 7.33 -- 8.63 -5.1 -- -- 0.713 15.8 13.8 225 4.85 6.47
4531.39 3.15 7.4 -2.49 -- -- -- -- 0.102 -- -- -- -- --
791.06 1.32 7.46 -- 8.65 -- -- -- 0.561 17.3 -- -- -- --
1677 1.91 7.27 -- -- -5.52 -- -- 0.666 -- -71.84 72 0.00385 11.2
4695.12 3.2 7.34 -- -- -- -- -- 0.379 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 331.41 temperature 10.0 270 > th dose dependent rect. 5 6
4 350.40 temperature 15.0 270 > th dose independent rect. 6 15
5 351.67 temperature 20.0 270 > th dose independent rect. 5 6
9 361.34 radiation 10.0 270 < th dose dependent rect. 21 10
13 367.23 temperature 20.0 270 > th dose independent rect. 6 4
19 369.48 radiation 10.0 270 < th dose independent rect. 21 9
21 369.92 precipitation 0.1 270 < th dose independent rect. 21 9
22 369.92 precipitation 0.1 270 < th dose dependent rect. 21 9
23 370.34 wind 9.0 270 < th dose independent rect. 6 15
24 371.00 radiation 40.0 270 < th dose dependent rect. 21 9
25 371.04 temperature 10.0 270 > th dose independent rect. 21 9
26 371.04 temperature 30.0 270 < th dose independent rect. 21 9
27 371.04 humidity 50.0 270 > th dose independent rect. 21 9
30 371.04 atmosphere 995.0 270 > th dose independent rect. 21 9
36 371.35 wind 9.0 270 < th dose independent rect. 21 9
40 373.75 temperature 15.0 10 > th dose dependent rect. 7 5
43 375.08 temperature 15.0 270 > th dose dependent rect. 7 2
51 379.98 wind 5.0 270 < th dose independent rect. 5 6
59 381.08 wind 9.0 270 < th dose dependent rect. 5 6
60 381.57 atmosphere 1015.0 270 < th dose independent rect. 6 15
78 386.85 precipitation 0.1 270 < th dose independent rect. 11 18
79 386.85 precipitation 0.1 270 < th dose dependent rect. 11 18
101 389.79 radiation 1.0 270 < th dose independent rect. 21 17
109 391.51 temperature 15.0 270 > th dose independent rect. 17 18
113 391.97 temperature 20.0 270 > th dose independent rect. 7 2
116 392.12 radiation 1.0 270 < th dose dependent rect. 22 16
122 392.91 humidity 50.0 270 > th dose independent rect. 17 17
134 394.52 radiation 1.0 270 > th dose independent rect. 4 7
149 395.43 precipitation 0.1 270 < th dose independent rect. 5 6
150 395.43 precipitation 0.1 270 < th dose dependent rect. 5 6
159 396.66 atmosphere 995.0 270 > th dose independent rect. 5 6
160 396.66 atmosphere 1015.0 270 < th dose independent rect. 5 6
161 396.66 temperature 10.0 270 > th dose independent rect. 11 18
170 398.08 precipitation 0.1 270 < th dose independent rect. 6 15
171 398.08 precipitation 0.1 270 < th dose dependent rect. 6 15
176 398.66 humidity 50.0 270 > th dose independent rect. 5 6
179 399.15 wind 1.0 270 > th dose independent rect. 10 7
187 399.82 wind 9.0 270 < th dose independent rect. 17 17
190 400.17 temperature 10.0 270 > th dose independent rect. 10 7
191 400.17 atmosphere 1015.0 270 < th dose independent rect. 10 7
196 400.37 wind 9.0 270 < th dose independent rect. 11 18
198 400.94 precipitation 0.1 270 < th dose independent rect. 10 7
199 400.94 precipitation 0.1 270 < th dose dependent rect. 10 7
218 403.90 radiation 1.0 270 > th dose independent rect. 11 6
224 404.46 atmosphere 995.0 270 > th dose independent rect. 17 17
228 404.84 radiation 1.0 270 > th dose independent rect. 10 8
265 408.82 wind 9.0 270 < th dose independent rect. 10 7
266 408.87 atmosphere 1015.0 270 < th dose independent rect. 22 8
268 409.01 temperature 15.0 90 > th dose independent rect. 19 16
272 409.59 wind 5.0 270 < th dose independent rect. 7 2
286 412.55 radiation 1.0 270 < th dose dependent sin 8 NA
288 412.69 radiation 1.0 270 > th dose independent sin 8 NA
310 414.66 wind 1.0 270 > th dose independent rect. 11 18
312 414.87 precipitation 0.1 270 < th dose independent rect. 17 17
313 414.87 precipitation 0.1 270 < th dose dependent rect. 17 17
314 415.09 wind 7.0 90 < th dose independent rect. 19 16
319 415.48 atmosphere 995.0 270 > th dose independent rect. 10 7
322 415.95 wind 9.0 270 < th dose dependent rect. 6 15
340 416.59 wind 9.0 270 < th dose dependent rect. 7 2
361 417.38 radiation 1.0 270 < th dose independent sin 8 NA
385 418.31 atmosphere 995.0 90 > th dose independent rect. 19 16
402 419.38 precipitation 0.1 270 < th dose independent rect. 9 22
403 419.38 precipitation 0.1 270 < th dose dependent rect. 9 22
408 419.54 temperature 30.0 270 < th dose independent rect. 17 17
409 419.56 atmosphere 995.0 270 > th dose independent rect. 11 18
470 423.13 temperature 20.0 10 > th dose independent rect. 7 6
501 426.34 atmosphere 995.0 270 > th dose independent rect. 6 15
515 426.85 radiation 1.0 270 > th dose independent rect. 7 2
519 427.21 precipitation 0.1 270 < th dose independent rect. 7 2
520 427.21 precipitation 0.1 270 < th dose dependent rect. 7 2
529 427.59 temperature 10.0 270 > th dose independent rect. 7 2
531 427.59 humidity 50.0 270 > th dose independent rect. 7 2
532 427.59 atmosphere 995.0 270 > th dose independent rect. 7 2
533 427.59 atmosphere 1015.0 270 < th dose independent rect. 7 2
534 427.59 temperature 10.0 270 > th dose independent rect. 9 22
535 427.66 temperature 10.0 90 > th dose dependent rect. 19 17
583 430.74 radiation 40.0 270 < th dose dependent rect. 16 7
587 430.97 radiation 20.0 270 < th dose independent rect. 16 7
645 433.03 humidity 50.0 270 > th dose independent rect. 16 7
652 433.49 radiation 40.0 270 < th dose independent rect. 7 2
653 433.52 temperature 30.0 270 < th dose independent rect. 7 2
678 435.04 wind 9.0 270 < th dose independent rect. 9 22
679 435.19 temperature 15.0 270 > th dose independent rect. 16 7
701 435.82 atmosphere 1015.0 270 < th dose independent rect. 11 18
721 436.65 humidity 90.0 270 < th dose independent rect. 11 6
730 436.94 temperature 10.0 270 > th dose dependent rect. 22 8
760 438.28 wind 1.0 270 > th dose independent rect. 5 6
790 439.55 radiation 40.0 270 < th dose independent rect. 16 7
791 439.55 temperature 10.0 270 > th dose independent rect. 23 17
836 441.01 wind 9.0 270 < th dose independent rect. 16 7
838 441.01 wind 9.0 270 < th dose dependent rect. 22 8
863 442.34 wind 7.0 10 < th dose independent rect. 7 6
869 442.69 atmosphere 1015.0 270 < th dose independent rect. 23 17
870 442.74 temperature 30.0 270 < th dose independent rect. 6 4
884 443.16 radiation 1.0 10 > th dose independent rect. 7 6
898 443.51 radiation 1.0 90 < th dose dependent sin 17 NA
901 443.64 wind 1.0 270 > th dose independent rect. 7 2
915 444.23 temperature 30.0 270 < th dose independent rect. 5 6
919 444.36 radiation 20.0 10 < th dose dependent sin 5 NA
925 444.67 atmosphere 995.0 270 > th dose independent rect. 23 17
931 444.83 wind 7.0 10 < th dose independent rect. 19 17
932 444.86 wind 1.0 270 > th dose independent rect. 22 8
937 445.09 radiation 20.0 90 < th dose dependent sin 6 NA
939 445.16 wind 1.0 270 > th dose independent rect. 6 4
961 445.79 radiation 40.0 10 < th dose independent rect. 12 19
967 446.14 humidity 50.0 270 > th dose independent rect. 6 15
977 446.54 precipitation 0.1 270 < th dose independent rect. 23 17
978 446.54 precipitation 0.1 270 < th dose dependent rect. 23 17
992 447.07 precipitation 0.1 10 < th dose independent rect. 7 6
993 447.07 precipitation 0.1 10 < th dose dependent rect. 7 6