Os05g0359500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein ATL5C precursor.
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Os05g0359500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING-H2 finger protein ATL5C precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.69 | 0.435 | 8 | 1.63 | 0.381 | 1.95 | 0.392 | -1.44 | -0.0427 | 8.6 | 26.25 | 2186 | -- | -- |
| 87.54 | 0.436 | 8.04 | 1.35 | 0.368 | 2.09 | 0.312 | -- | -0.129 | 8.63 | 25.08 | 2201 | -- | -- |
| 86.16 | 0.432 | 8 | 1.64 | 0.372 | 1.96 | -- | -1.4 | -0.0404 | 8.75 | 26.14 | 2161 | -- | -- |
| 87.69 | 0.436 | 8.04 | 1.35 | 0.397 | 2.09 | -- | -- | -0.119 | 8.62 | 24.95 | 2181 | -- | -- |
| 93.41 | 0.45 | 7.99 | 1.79 | -- | 2.01 | -- | -1.97 | -0.00301 | -- | 28.7 | 2165 | -- | -- |
| 162.05 | 0.597 | 8.15 | 0.526 | 0.54 | -- | 0.225 | -- | -0.639 | 9.36 | -- | -- | -- | -- |
| 162.23 | 0.596 | 8.15 | 0.535 | 0.538 | -- | -- | -- | -0.638 | 9.41 | -- | -- | -- | -- |
| 96.17 | 0.457 | 8.04 | 1.36 | -- | 2.15 | -- | -- | -0.0913 | -- | 26 | 2178 | -- | -- |
| 123.47 | 0.518 | 8.1 | -- | 0.54 | 1.69 | -- | -- | -0.388 | 8.69 | 25.6 | 1392 | -- | -- |
| 179.22 | 0.626 | 8.17 | 0.531 | -- | -- | -- | -- | -0.637 | -- | -- | -- | -- | -- |
| 169.76 | 0.609 | 8.17 | -- | 0.538 | -- | -- | -- | -0.698 | 9.34 | -- | -- | -- | -- |
| 127.63 | 0.526 | 8.13 | -- | -- | 1.83 | -- | -- | -0.448 | -- | 32.28 | 705 | -- | -- |
| 186.67 | 0.638 | 8.18 | -- | -- | -- | -- | -- | -0.695 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 78.94 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 184 | 82.74 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 272 | 83.70 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 418 | 85.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 512 | 85.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 530 | 85.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 609 | 86.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 624 | 86.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 685 | 86.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 692 | 86.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 699 | 86.88 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 717 | 86.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 824 | 87.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 840 | 87.46 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 918 | 87.76 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 938 | 87.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |