BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0193400 Os06g0193400|AK065667
(478 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0193400 Similar to Helix-loop-helix protein homolog 872 0.0
Os03g0797600 Similar to Helix-loop-helix protein homolog 172 7e-43
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 171 1e-42
Os06g0184000 158 8e-39
Os02g0795800 150 2e-36
Os07g0182200 Similar to Phytochrome-interacting factor 3 (P... 118 8e-27
Os05g0103000 Similar to MYC1 96 5e-20
Os09g0501600 Similar to MYC1 94 3e-19
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 93 4e-19
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 93 5e-19
Os08g0524800 Similar to TA1 protein (Fragment) 92 8e-19
Os03g0802900 Similar to MYC1 92 8e-19
Os09g0474100 Similar to TA1 protein (Fragment) 92 1e-18
Os01g0915600 Similar to TA1 protein (Fragment) 92 1e-18
Os06g0275600 Similar to TA1 protein (Fragment) 90 3e-18
Os12g0589000 90 3e-18
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 90 5e-18
Os09g0510500 Similar to Phytochrome-interacting factor 4 (B... 89 8e-18
Os08g0487700 Similar to TA1 protein (Fragment) 89 8e-18
Os08g0536800 Similar to TA1 protein (Fragment) 89 9e-18
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 87 3e-17
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 86 4e-17
Os07g0588400 86 5e-17
Os02g0564700 Conserved hypothetical protein 82 8e-16
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 81 1e-15
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 80 3e-15
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 80 4e-15
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 79 6e-15
Os03g0617800 Similar to INDEHISCENT protein 78 1e-14
Os08g0506700 Basic helix-loop-helix dimerisation region bHL... 77 3e-14
Os07g0143200 Basic helix-loop-helix dimerisation region bHL... 77 4e-14
Os02g0710300 Similar to INDEHISCENT protein 76 5e-14
Os01g0707500 Similar to Transcription factor LAX PANICLE 75 9e-14
Os01g0111500 Basic helix-loop-helix dimerisation region bHL... 74 3e-13
Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-l... 72 7e-13
Os01g0566800 Basic helix-loop-helix dimerisation region bHL... 72 9e-13
Os04g0489600 Basic helix-loop-helix dimerisation region bHL... 71 1e-12
Os05g0541400 Similar to Transcription factor LAX PANICLE 70 3e-12
Os10g0556200 Similar to SPATULA 67 3e-11
Os06g0210600 67 3e-11
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/478 (90%), Positives = 433/478 (90%)
Query: 1 MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSLKITENERNPT 60
MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSLKITENERNPT
Sbjct: 1 MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSLKITENERNPT 60
Query: 61 MLANGCLPYNTQAHPLSGQILPKGELPXXXXXXXXXXXXXXXXXXXIPPGVLQCNSTSGT 120
MLANGCLPYNTQAHPLSGQILPKGELP IPPGVLQCNSTSGT
Sbjct: 61 MLANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNLRSNSIPPGVLQCNSTSGT 120
Query: 121 FDAKLDTPGLAELPHALXXXXXXXXXXXXAFLADVHAVSSAPTLCSAFQNVSSFMEPVNL 180
FDAKLDTPGLAELPHAL AFLADVHAVSSAPTLCSAFQNVSSFMEPVNL
Sbjct: 121 FDAKLDTPGLAELPHALSSSIDSNGSDISAFLADVHAVSSAPTLCSAFQNVSSFMEPVNL 180
Query: 181 DAFGFQGAQNVAMLNKTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTVXXXXXXX 240
DAFGFQGAQNVAMLNKTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTV
Sbjct: 181 DAFGFQGAQNVAMLNKTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTVLQALGAG 240
Query: 241 XXXXXXXEQNIRNIPLPTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHSSDVEP 300
EQNIRNIPLPTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHSSDVEP
Sbjct: 241 GLKAAQQEQNIRNIPLPTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHSSDVEP 300
Query: 301 QANSAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASM 360
QANSAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASM
Sbjct: 301 QANSAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASM 360
Query: 361 LDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPD 420
LDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPD
Sbjct: 361 LDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPD 420
Query: 421 SEDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAAAAAIPPEK 478
SEDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAAAAAIPPEK
Sbjct: 421 SEDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAAAAAIPPEK 478
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 172 bits (435), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 110/152 (72%), Gaps = 5/152 (3%)
Query: 313 KPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQ 372
+P+ RARRGQATDPHSIAERLRRE+I+ERM+ LQ LVPN+NK D+A+MLDEI+DYVKFL+
Sbjct: 130 RPKVRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLR 189
Query: 373 LQVKVLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPDSEDSSAFEQEVV 432
LQVKVLSMSRLG GAV L+ + S S G + + + E++V
Sbjct: 190 LQVKVLSMSRLGGAGAVAQLVADIPLSVKGEASDSG-----GNQQIWEKWSTDGTERQVA 244
Query: 433 KLMETSIISAMQYLQNKGLCLMPIALASAISN 464
KLME I +AMQ+LQ+K LC+MPI+LA AI +
Sbjct: 245 KLMEEDIGAAMQFLQSKALCMMPISLAMAIYD 276
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/165 (58%), Positives = 113/165 (68%), Gaps = 18/165 (10%)
Query: 313 KPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK---ADKASMLDEIIDYVK 369
+ R RARRGQATDPHSIAERLRRE+I+ERMK LQ LVPN+NK DKASMLDEIIDYVK
Sbjct: 247 RQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVK 306
Query: 370 FLQLQVK----------VLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMP 419
FLQLQVK VLSMSRLG AV PL+ + +E + + +
Sbjct: 307 FLQLQVKASTYTKLLIHVLSMSRLGGAAAVAPLVADMSSEGRGGGAANGGAPAAAG---- 362
Query: 420 DSEDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISN 464
S+ + EQ+V KLME + +AMQYLQ KGLCLMPI+LASAIS+
Sbjct: 363 -SDSLTVTEQQVAKLMEEDMGTAMQYLQGKGLCLMPISLASAISS 406
>Os06g0184000
Length = 430
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 103/176 (58%), Gaps = 15/176 (8%)
Query: 295 SSDVEPQANSAPGNSANAKP-RTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSN 353
S P +S G +A + R RARRGQATDPHSIAERLRRE+I+ERMK+LQ LVPN+N
Sbjct: 192 SGGTAPVTSSGGGGTAPPRQQRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNAN 251
Query: 354 KADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLL--------------RESQTE 399
K DKASMLDEIIDYVKFLQLQVKVLSMSRLG + PL+
Sbjct: 252 KTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAGMAPLVASMSSEGNSNGSSNGGGGKA 311
Query: 400 CHSNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMP 455
G EQ+V K+ME + +AMQYLQ KGLCLMP
Sbjct: 312 SKGGTGGEGGGGGGGGGGGGTGGGMRVTEQQVAKMMEEDMGTAMQYLQGKGLCLMP 367
>Os02g0795800
Length = 463
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 104/163 (63%), Gaps = 28/163 (17%)
Query: 324 TDPHSIAER----------------------LRREKISERMKNLQVLVPNSNKADKASML 361
TDPHSIAER LRRE+I+ERMK LQ LVPN+NK DKASML
Sbjct: 220 TDPHSIAERVYHSPTTFPFSPPFFIASMPCCLRRERIAERMKALQELVPNANKTDKASML 279
Query: 362 DEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPDS 421
DEIIDYVKFLQLQVKVLSMSRLG AV PL+ +E + N + ++S+ + + +
Sbjct: 280 DEIIDYVKFLQLQVKVLSMSRLGGASAVAPLVANMSSESNGNGNATSSSGNGEAANGSSN 339
Query: 422 EDSSA------FEQEVVKLMETSIISAMQYLQNKGLCLMPIAL 458
D++ EQ+V KLME + SAMQYLQ KGLCLMPI+L
Sbjct: 340 GDNNGGGTLRVTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISL 382
>Os07g0182200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 136
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 87/136 (63%), Gaps = 5/136 (3%)
Query: 342 MKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECH 401
M+ LQ LVPN+NK D+A+MLDEI+DYVKFL+LQVKVLSMSRLG GAV L+ +
Sbjct: 1 MRALQDLVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPISVK 60
Query: 402 SNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASA 461
S S S + + + E++V KLME I +AMQ+LQ+K LC+MPI+LA A
Sbjct: 61 GEASDSGS-----KQQIWEKWSTDGTEKQVAKLMEEDIGAAMQFLQSKALCMMPISLAMA 115
Query: 462 ISNQKGMAAAAAIPPE 477
I + + ++ PE
Sbjct: 116 IYDTQHSQDGHSVKPE 131
>Os05g0103000 Similar to MYC1
Length = 339
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Query: 293 NHSSDVEPQANSAPGNSANA-KPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPN 351
H DV+ +A A G A RARRGQATD HS+AER+RREKISERMK LQ LVP
Sbjct: 156 QHDDDVKKKAKEAAGGEPPAGYIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPG 215
Query: 352 SNKAD-KASMLDEIIDYVKFLQLQVKVLSM 380
+K KA MLDEII YV+ LQ QV+ LSM
Sbjct: 216 CDKVTGKALMLDEIISYVQSLQNQVEFLSM 245
>Os09g0501600 Similar to MYC1
Length = 366
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK-ADKASMLDEIIDYVKFLQLQ 374
RARRGQATD HS+AER+RREKIS+RMK LQ LVP NK KA MLDEII+YV+ LQ Q
Sbjct: 174 VRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQ 233
Query: 375 VKVLSM 380
V+ LSM
Sbjct: 234 VEFLSM 239
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKA-DKASMLDEIIDYVKFLQLQ 374
RARRGQATD HS+AER+RRE+ISERM+ LQ LVP NK KA MLDEII+YV+ LQ Q
Sbjct: 164 VRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQ 223
Query: 375 VKVLSM 380
V+ LSM
Sbjct: 224 VEFLSM 229
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
Query: 317 RARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK-ADKASMLDEIIDYVKFLQLQV 375
RARRGQATD HS+AER+RRE+ISERMK LQ LVP NK KA MLDEII+YV+ LQ QV
Sbjct: 82 RARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQV 141
Query: 376 KVLSM 380
+ LSM
Sbjct: 142 EFLSM 146
>Os08g0524800 Similar to TA1 protein (Fragment)
Length = 405
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 57/79 (72%), Gaps = 9/79 (11%)
Query: 311 NAKP--------RTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKA-DKASML 361
NAKP RARRGQATD HS+AER+RRE+IS+RMK LQ LVP NK KA ML
Sbjct: 191 NAKPVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALML 250
Query: 362 DEIIDYVKFLQLQVKVLSM 380
DEII+YV+ LQ QV+ LSM
Sbjct: 251 DEIINYVQSLQRQVEFLSM 269
>Os03g0802900 Similar to MYC1
Length = 265
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
Query: 317 RARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKA-DKASMLDEIIDYVKFLQLQV 375
RARRGQATD HS+AER RREKISERMK LQ LVP NK KAS+LDEII+Y++ LQ QV
Sbjct: 137 RARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQV 196
Query: 376 KVLSM 380
+ LSM
Sbjct: 197 EFLSM 201
>Os09g0474100 Similar to TA1 protein (Fragment)
Length = 428
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKA-DKASMLDEIIDYVKFLQLQ 374
RARRGQAT+ HS+AERLRREKISERMK LQ LVP +K KA MLDEII+YV+ LQ Q
Sbjct: 248 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 307
Query: 375 VKVLSM 380
V+ LSM
Sbjct: 308 VEFLSM 313
>Os01g0915600 Similar to TA1 protein (Fragment)
Length = 481
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 315 RTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK-ADKASMLDEIIDYVKFLQL 373
RARRG+ATD HS+AER+RREKIS+RMK LQ LVP NK KA MLDEII+YV+ LQ
Sbjct: 276 HVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQR 335
Query: 374 QVKVLSM 380
QV+ LSM
Sbjct: 336 QVEFLSM 342
>Os06g0275600 Similar to TA1 protein (Fragment)
Length = 437
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKA-DKASMLDEIIDYVKFLQLQ 374
RARRGQAT+ HS+AER+RREKISERMK LQ LVP +K KA MLDEII+YV+ LQ Q
Sbjct: 260 VRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 319
Query: 375 VKVLSM 380
V+ LSM
Sbjct: 320 VEFLSM 325
>Os12g0589000
Length = 304
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 54/70 (77%)
Query: 310 ANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVK 369
A +K ++RA RG ATDP S+ R RRE+I+ER+K LQ LVPN K D ++ML+E + YVK
Sbjct: 210 ATSKGKSRAGRGAATDPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVHYVK 269
Query: 370 FLQLQVKVLS 379
FLQLQ+K+LS
Sbjct: 270 FLQLQIKLLS 279
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Query: 299 EPQANSAPGNSANAKPR--TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKAD 356
E +S P +A A+PR + ++R +A + H+++E+ RR KI+E+MK LQ L+PNSNK D
Sbjct: 1 EAGGSSEPEAAAGARPRGGSGSKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNKTD 60
Query: 357 KASMLDEIIDYVKFLQLQVKVLSM 380
KASMLDE I+Y+K LQLQV++LSM
Sbjct: 61 KASMLDEAIEYLKQLQLQVQMLSM 84
>Os09g0510500 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 282
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKAD-KASMLDEIIDYVKFLQLQ 374
RARRGQATD HS+AER+RRE+ISERM+ LQ LVP +K KA +LDEII+YV+ LQ Q
Sbjct: 107 VRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQ 166
Query: 375 VKVLSM 380
V+ LSM
Sbjct: 167 VEFLSM 172
>Os08g0487700 Similar to TA1 protein (Fragment)
Length = 365
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKA-DKASMLDEIIDYVKFLQLQ 374
RAR+GQAT+ HS+AERLRREKISERMK LQ LVP +K KA MLDEII+YV+ LQ Q
Sbjct: 176 VRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSLQRQ 235
Query: 375 VKVLSM 380
V+ LSM
Sbjct: 236 VEFLSM 241
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 2/76 (2%)
Query: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKAD-KASMLDEIIDYVKFLQLQ 374
RARRGQATD HS+AER+RRE+ISERM+ LQ LVP +K KA +LDEII+YV+ LQ Q
Sbjct: 141 VRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQ 200
Query: 375 VKVLSMSRLGAPGAVL 390
V+ LSM R+ + VL
Sbjct: 201 VEFLSM-RIASMSPVL 215
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 296 SDVEPQANSAPGNSANAK-PRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK 354
S ++ + +S+ G+ RA+RGQAT+ HS+AERLRR+KISERMK LQ LVP +K
Sbjct: 126 SKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSK 185
Query: 355 -ADKASMLDEIIDYVKFLQLQVKVLSM 380
KA MLDEII+YV+ LQ QV+ LSM
Sbjct: 186 ITGKAVMLDEIINYVQSLQRQVEFLSM 212
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 295 SSDVEPQANSAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK 354
S DVE + SA + A+ T A+R +A + H+++ER RR++I+E+MK LQ L+P+ NK
Sbjct: 244 SEDVEFE--SAAATCSPAQKTTTAKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNK 301
Query: 355 ADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVL 390
DKASMLDE I+Y+K LQLQ++++ M AP AV+
Sbjct: 302 TDKASMLDEAIEYLKSLQLQLQMMWMGGGMAPPAVM 337
>Os07g0588400
Length = 256
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 55/82 (67%), Gaps = 6/82 (7%)
Query: 302 ANSAPGN-SANAKPR-----TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKA 355
S GN NAKP TRA RG ATDP S+ R RRE+I+ER++ LQ LVPN K
Sbjct: 167 CTSEEGNLEGNAKPSSKKMGTRANRGAATDPQSLYARKRRERINERLRILQNLVPNGTKV 226
Query: 356 DKASMLDEIIDYVKFLQLQVKV 377
D ++ML+E + YVKFLQLQ+KV
Sbjct: 227 DISTMLEEAVQYVKFLQLQIKV 248
>Os02g0564700 Conserved hypothetical protein
Length = 136
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 415 PPDMPDSEDSSA-FEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAAAAA 473
P D P+ D A FEQEVVKLME ++ +AMQYLQ+KGLCLMP+ALASAIS QKG ++AA
Sbjct: 36 PGDQPELLDGGAMFEQEVVKLMEDNMTTAMQYLQSKGLCLMPVALASAISAQKGTSSAAV 95
Query: 474 IPPEK 478
P +K
Sbjct: 96 RPEKK 100
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 319 RRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVL 378
+R + + H+++ER RR++I+E+M+ LQ L+PN NK DKASMLDE I+Y+K LQLQV+++
Sbjct: 381 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMM 440
Query: 379 SM-SRLGAPGAVLP 391
SM + L P +LP
Sbjct: 441 SMGTGLCIPPMLLP 454
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 315 RTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK-ADKASMLDEIIDYVKFLQL 373
+ RA+RG AT P SIAER+RR +ISER++ LQ LVPN K + A MLD +DY+K LQ
Sbjct: 318 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQK 377
Query: 374 QVKVLSMSR 382
QVKVL+ SR
Sbjct: 378 QVKVLNDSR 386
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 54/68 (79%)
Query: 319 RRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVL 378
RR +A + H+++ER RR++I+E+M+ LQ L+P+ NK DKAS+LDE I+Y+K LQ+QV+++
Sbjct: 217 RRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIM 276
Query: 379 SMSRLGAP 386
M+ AP
Sbjct: 277 WMTTGMAP 284
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 52/63 (82%)
Query: 318 ARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKV 377
++R + + H+++ER RR++I+E+M+ LQ L+PN NK DKASML+E I+Y+K LQLQV++
Sbjct: 331 SKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQM 390
Query: 378 LSM 380
+SM
Sbjct: 391 MSM 393
>Os03g0617800 Similar to INDEHISCENT protein
Length = 310
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 312 AKPRTRARRGQ--ATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVK 369
AK +A+ G ATDP S+ R RRE+I+ER+K LQ LVPN K D ++ML+E + YVK
Sbjct: 215 AKSNGKAQSGHRSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVK 274
Query: 370 FLQLQVKVLS 379
FLQLQ+K+LS
Sbjct: 275 FLQLQIKLLS 284
>Os08g0506700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 399
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 315 RTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK-ADKASMLDEIIDYVKFLQL 373
+ RA+RG AT P SIAER+RR +ISER++ LQ LVPN +K + A MLD +DY+K LQ
Sbjct: 317 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 376
Query: 374 QVKVLSMSR 382
QVK L+ SR
Sbjct: 377 QVKGLNDSR 385
>Os07g0143200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 447
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 52/63 (82%)
Query: 319 RRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVL 378
RR +A + H+++ER RR++I+E+++ LQ LVP+ NK DKAS+LDE I+Y+K LQ+QV+++
Sbjct: 226 RRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIM 285
Query: 379 SMS 381
M+
Sbjct: 286 WMT 288
>Os02g0710300 Similar to INDEHISCENT protein
Length = 300
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 325 DPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLS 379
DP S+A + RRE+ISER++ LQ LVPN K D +ML++ I YVKFLQLQVKVL+
Sbjct: 208 DPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEKAISYVKFLQLQVKVLA 262
>Os01g0707500 Similar to Transcription factor LAX PANICLE
Length = 393
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 313 KPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQ 372
KPR + R ++DP ++A RLRRE++S+R++ LQ LVP NK D ASMLDE Y+KFL+
Sbjct: 273 KPRRKNVR-ISSDPQTVAARLRRERVSDRLRVLQKLVPGGNKMDTASMLDEAASYLKFLK 331
Query: 373 LQVKVL 378
QV+ L
Sbjct: 332 SQVQKL 337
>Os01g0111500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 295
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 43/54 (79%)
Query: 326 PHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLS 379
P S A ++RRE+ISER+K LQ LVPN K D +ML++ I+YVKFLQLQVKVL+
Sbjct: 209 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLA 262
>Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1)
(Reduced phytochrome signaling) (Basic helix-loop-helix
FBI1 protein) (Basic helix-loop-helix protein 26)
(bHLH26) (AtbHLH026) (Reduced sensitivity to far-red
light)
Length = 181
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 327 HSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAP 386
H+ +ER RR++I+E++K LQ L+PN K DK SMLDE IDY+K LQLQ+++L M + AP
Sbjct: 18 HNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGMAP 77
Query: 387 GAVLPLLRESQTECHSNPS 405
V P L++ ++PS
Sbjct: 78 -VVPPELQQYMHYITADPS 95
>Os01g0566800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 496
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 310 ANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVK 369
A +PR R R ++DP ++A R RRE+ISER++ LQ LVP K D ASMLDE +Y++
Sbjct: 371 AGERPRRRNVR-ISSDPQTVAARQRRERISERLRVLQKLVPGGAKMDTASMLDEAANYLR 429
Query: 370 FLQLQVKVL-SMSRLGAPGAVLPL 392
FL+ Q++ L ++ R P A + +
Sbjct: 430 FLKSQIRELQTLDRRNYPNAAMSI 453
>Os04g0489600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 369
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 315 RTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKAS-MLDEIIDYVKFLQL 373
R RA+RG AT P SIAER RR +ISE+++ LQ LVPN +K S MLD +D++K LQ
Sbjct: 284 RVRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQS 343
Query: 374 QVKVL 378
Q++ L
Sbjct: 344 QLQTL 348
>Os05g0541400 Similar to Transcription factor LAX PANICLE
Length = 414
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 323 ATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVL 378
++DP ++A RLRRE++SER++ LQ LVP +K D A+MLDE Y+KFL+ Q++ L
Sbjct: 302 SSDPQTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEAL 357
>Os10g0556200 Similar to SPATULA
Length = 191
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 39/44 (88%)
Query: 334 RREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKV 377
RR++I+++MK LQ LVPNS+K DKASMLDE+IDY+K LQ QV+V
Sbjct: 13 RRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQV 56
>Os06g0210600
Length = 211
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 323 ATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVL 378
+++P S+A RLRRE++S+RM+ LQ LVP + D ASML+E I YVKFL+ V+ L
Sbjct: 121 SSEPQSVAARLRRERVSQRMRALQRLVPGGARLDTASMLEEAIRYVKFLKGHVQSL 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,011,992
Number of extensions: 629911
Number of successful extensions: 1710
Number of sequences better than 1.0e-10: 44
Number of HSP's gapped: 1695
Number of HSP's successfully gapped: 44
Length of query: 478
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 373
Effective length of database: 11,553,331
Effective search space: 4309392463
Effective search space used: 4309392463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)