Os02g0705500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os02g0705500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.33 | 0.528 | 6.42 | -1.99 | 0.942 | -1.67 | -2.24 | -2.38 | -1.14 | 1.72 | 0.00992 | 734 | -- | -- |
| 130.17 | 0.531 | 6.4 | -1.81 | 0.832 | -2.33 | -1.85 | -- | -1.07 | 23.3 | 0.009995 | 729 | -- | -- |
| 130.32 | 0.536 | 6.36 | -1.92 | 1.87 | -0.365 | -- | 1.66 | -1.11 | 4.98 | 0.06 | 749 | -- | -- |
| 144.18 | 0.559 | 6.38 | -1.93 | 1.5 | -0.608 | -- | -- | -1.09 | 4.22 | 16.11 | 410 | -- | -- |
| 157.59 | 0.585 | 6.52 | -1.5 | -- | -1.84 | -- | 1 | -1.17 | -- | 0.06998 | 516 | -- | -- |
| 149.03 | 0.572 | 6.39 | -2.01 | 1.95 | -- | -0.727 | -- | -1.16 | 4.04 | -- | -- | -- | -- |
| 150.41 | 0.574 | 6.38 | -2 | 1.95 | -- | -- | -- | -1.16 | 4.13 | -- | -- | -- | -- |
| 154.94 | 0.58 | 6.35 | -1.94 | -- | -2.03 | -- | -- | -0.872 | -- | 2.04 | 502 | -- | -- |
| 239.34 | 0.721 | 6.34 | -- | 1.32 | -1.01 | -- | -- | -0.835 | 3.73 | 20.02 | 478 | -- | -- |
| 357.12 | 0.883 | 6.39 | -1.92 | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
| 255.64 | 0.748 | 6.33 | -- | 1.91 | -- | -- | -- | -0.933 | 4.15 | -- | -- | -- | -- |
| 233.44 | 0.712 | 6.34 | -- | -- | -2.02 | -- | -- | -0.882 | -- | 0.0002163 | 528 | -- | -- |
| 454.3 | 0.995 | 6.35 | -- | -- | -- | -- | -- | -0.89 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.12 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 8 |
| 2 | 123.29 | temperature | 30.0 | 720 | < th | dose independent | sin | 0 | NA |
| 4 | 124.00 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 7 | 124.10 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 22 |
| 9 | 124.19 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 17 |
| 10 | 124.32 | radiation | 40.0 | 270 | < th | dose dependent | sin | 19 | NA |
| 15 | 124.43 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 13 |
| 18 | 124.51 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 30 | 124.65 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 15 |
| 31 | 124.66 | humidity | 50.0 | 720 | > th | dose independent | rect. | 6 | 9 |
| 34 | 124.73 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 20 | 11 |
| 43 | 124.82 | radiation | 20.0 | 90 | < th | dose dependent | sin | 17 | NA |
| 47 | 124.85 | wind | 1.0 | 720 | > th | dose independent | rect. | 14 | 9 |
| 63 | 124.97 | temperature | 30.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 66 | 125.00 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 18 |
| 74 | 125.05 | temperature | 30.0 | 720 | < th | dose independent | sin | 14 | NA |
| 79 | 125.12 | radiation | 1.0 | 90 | < th | dose independent | sin | 17 | NA |
| 86 | 125.16 | radiation | 40.0 | 270 | < th | dose independent | sin | 12 | NA |
| 91 | 125.22 | temperature | 30.0 | 720 | < th | dose independent | rect. | 13 | 16 |
| 93 | 125.24 | temperature | 30.0 | 10 | < th | dose independent | sin | 0 | NA |
| 100 | 125.29 | radiation | 20.0 | 270 | < th | dose independent | sin | 18 | NA |
| 119 | 125.34 | radiation | 1.0 | 30 | < th | dose dependent | sin | 16 | NA |
| 128 | 125.38 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 11 |
| 129 | 125.39 | humidity | 60.0 | 90 | > th | dose independent | sin | 17 | NA |
| 142 | 125.46 | wind | 1.0 | 720 | > th | dose independent | rect. | 8 | 21 |
| 157 | 125.58 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 185 | 125.69 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 10 | 12 |
| 206 | 125.82 | humidity | 50.0 | 720 | > th | dose independent | rect. | 24 | 16 |
| 230 | 125.98 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 242 | 126.08 | temperature | 30.0 | 270 | < th | dose independent | sin | 6 | NA |
| 269 | 126.21 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 6 | 16 |
| 281 | 126.27 | radiation | 40.0 | 720 | < th | dose independent | rect. | 1 | 9 |
| 295 | 126.32 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 8 | 16 |
| 298 | 126.32 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 299 | 126.33 | humidity | 50.0 | 720 | > th | dose independent | rect. | 10 | 6 |
| 300 | 126.33 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 12 | 8 |
| 301 | 126.33 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 307 | 126.36 | radiation | 40.0 | 720 | < th | dose independent | rect. | 18 | 16 |
| 309 | 126.37 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 9 | 8 |
| 310 | 126.37 | radiation | 20.0 | 270 | < th | dose independent | rect. | 10 | 13 |
| 311 | 126.37 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 318 | 126.40 | humidity | 50.0 | 720 | > th | dose independent | rect. | 12 | 16 |
| 353 | 126.54 | humidity | 50.0 | 720 | > th | dose independent | sin | 0 | NA |
| 385 | 126.62 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 6 | 19 |
| 398 | 126.69 | wind | 3.0 | 720 | < th | dose dependent | rect. | 23 | 13 |
| 401 | 126.70 | atmosphere | 995.0 | 720 | > th | dose independent | sin | 8 | NA |
| 409 | 126.72 | wind | 1.0 | 720 | > th | dose independent | rect. | 10 | 19 |
| 412 | 126.72 | wind | 3.0 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 417 | 126.74 | temperature | 30.0 | 10 | < th | dose independent | rect. | 2 | 14 |
| 422 | 126.75 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 15 |
| 430 | 126.77 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 437 | 126.79 | wind | 3.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 446 | 126.83 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 13 | 9 |
| 447 | 126.83 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 6 | 23 |
| 450 | 126.84 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 3 | 15 |
| 451 | 126.84 | humidity | 50.0 | 720 | > th | dose independent | rect. | 6 | 16 |
| 453 | 126.85 | radiation | 1.0 | 90 | > th | dose independent | sin | 21 | NA |
| 460 | 126.87 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 5 | 13 |
| 465 | 126.88 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 10 | 15 |
| 469 | 126.89 | humidity | 50.0 | 720 | > th | dose independent | rect. | 13 | 2 |
| 477 | 126.90 | wind | 3.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 480 | 126.90 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 24 | 17 |
| 486 | 126.91 | humidity | 50.0 | 720 | > th | dose independent | rect. | 6 | 13 |
| 487 | 126.91 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 496 | 126.93 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 13 | 5 |
| 499 | 126.94 | wind | 1.0 | 720 | > th | dose independent | rect. | 15 | 14 |
| 520 | 126.99 | humidity | 50.0 | 720 | > th | dose independent | sin | 6 | NA |
| 552 | 127.05 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 6 | 21 |
| 559 | 127.06 | wind | 3.0 | 720 | < th | dose dependent | rect. | 23 | 9 |
| 566 | 127.08 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 12 |
| 568 | 127.08 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 13 | 15 |
| 575 | 127.09 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 577 | 127.10 | wind | 1.0 | 720 | > th | dose independent | sin | 0 | NA |
| 597 | 127.14 | wind | 3.0 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 610 | 127.17 | humidity | 50.0 | 720 | > th | dose independent | rect. | 8 | 20 |
| 634 | 127.24 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 635 | 127.24 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 8 |
| 644 | 127.24 | wind | 3.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 659 | 127.27 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 18 | 20 |
| 660 | 127.28 | atmosphere | 995.0 | 720 | > th | dose independent | sin | 14 | NA |
| 671 | 127.29 | wind | 3.0 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 688 | 127.33 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 706 | 127.35 | wind | 1.0 | 720 | > th | dose independent | sin | 14 | NA |
| 709 | 127.35 | wind | 3.0 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 719 | 127.37 | wind | 1.0 | 270 | > th | dose independent | sin | 20 | NA |
| 730 | 127.39 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 741 | 127.43 | wind | 7.0 | 720 | < th | dose independent | rect. | 21 | 8 |
| 765 | 127.46 | radiation | 40.0 | 720 | < th | dose independent | rect. | 14 | 16 |
| 770 | 127.47 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 13 |
| 771 | 127.47 | radiation | 40.0 | 720 | < th | dose independent | rect. | 8 | 16 |
| 801 | 127.51 | temperature | 25.0 | 720 | < th | dose independent | rect. | 4 | 5 |
| 804 | 127.51 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 818 | 127.53 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 10 | 17 |
| 819 | 127.54 | wind | 1.0 | 270 | > th | dose independent | sin | 11 | NA |
| 843 | 127.58 | atmosphere | 995.0 | 720 | > th | dose independent | sin | 2 | NA |
| 879 | 127.63 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 15 |
| 881 | 127.63 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 889 | 127.64 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 896 | 127.65 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 11 |
| 898 | 127.65 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 913 | 127.67 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 919 | 127.68 | temperature | 30.0 | 30 | < th | dose independent | sin | 9 | NA |
| 942 | 127.71 | wind | 3.0 | 720 | > th | dose independent | rect. | 10 | 9 |
| 944 | 127.71 | humidity | 50.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 963 | 127.73 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 17 |
| 972 | 127.74 | humidity | 50.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 986 | 127.76 | radiation | 1.0 | 90 | < th | dose independent | rect. | 12 | 15 |
| 994 | 127.77 | temperature | 30.0 | 10 | < th | dose independent | rect. | 24 | 17 |