Os08g0536800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TA1 protein (Fragment).
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Os08g0536800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TA1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.14 | 0.684 | 3.81 | -0.34 | 0.412 | 1.11 | -0.856 | -1.62 | 0.162 | 10.1 | 24.72 | 4150 | -- | -- |
| 213.22 | 0.68 | 3.79 | -0.523 | 0.44 | 1.04 | -0.789 | -- | 0.304 | 9.97 | 22.99 | 3710 | -- | -- |
| 214.88 | 0.683 | 3.81 | -0.353 | 0.422 | 1.11 | -- | -1.71 | 0.167 | 9.62 | 24.7 | 4143 | -- | -- |
| 214.3 | 0.682 | 3.84 | -0.7 | 0.456 | 1.01 | -- | -- | 0.232 | 9.89 | 22.97 | 3232 | -- | -- |
| 222.73 | 0.695 | 3.82 | -0.351 | -- | 1.23 | -- | -1.61 | 0.206 | -- | 24.82 | 3634 | -- | -- |
| 240.76 | 0.727 | 3.93 | -1.19 | 0.483 | -- | -0.889 | -- | -0.203 | 10.6 | -- | -- | -- | -- |
| 243.95 | 0.731 | 3.93 | -1.23 | 0.492 | -- | -- | -- | -0.207 | 10.3 | -- | -- | -- | -- |
| 222.68 | 0.695 | 3.85 | -0.636 | -- | 0.974 | -- | -- | 0.17 | -- | 23.9 | 2171 | -- | -- |
| 224.38 | 0.698 | 3.82 | -- | 0.463 | 1.28 | -- | -- | 0.278 | 9.97 | 21.7 | 4104 | -- | -- |
| 258.68 | 0.752 | 3.94 | -1.23 | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
| 283.56 | 0.788 | 3.9 | -- | 0.499 | -- | -- | -- | -0.0702 | 10.5 | -- | -- | -- | -- |
| 235.43 | 0.715 | 3.83 | -- | -- | 1.39 | -- | -- | 0.287 | -- | 21 | 6436 | -- | -- |
| 298.83 | 0.807 | 3.91 | -- | -- | -- | -- | -- | -0.0713 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 209.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 2 | 209.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 3 | 210.04 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 7 | 210.34 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 9 | 210.45 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 10 | 210.46 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 40 | 210.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 41 | 210.87 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 42 | 210.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 67 | 211.07 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 68 | 211.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 106 | 211.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 121 | 211.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 13 |
| 139 | 211.42 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 182 | 211.56 | temperature | 25 | 4320 | < th | dose independent | sin | 16 | NA |
| 207 | 211.64 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 247 | 211.73 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 286 | 211.80 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 342 | 211.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 356 | 211.98 | temperature | 25 | 4320 | > th | dose independent | sin | 16 | NA |
| 367 | 211.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 7 |
| 374 | 212.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 402 | 212.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 510 | 212.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 528 | 212.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 567 | 212.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 614 | 212.55 | temperature | 20 | 4320 | > th | dose dependent | sin | 12 | NA |
| 640 | 212.60 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 643 | 212.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 22 |
| 793 | 212.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 21 |
| 844 | 212.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 895 | 212.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 22 |
| 921 | 213.01 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 21 |
| 929 | 213.02 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 952 | 213.05 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 998 | 213.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 23 |