BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0536800 Os08g0536800|AK059041
(309 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0536800 Similar to TA1 protein (Fragment) 532 e-151
Os09g0510500 Similar to Phytochrome-interacting factor 4 (B... 268 4e-72
Os05g0103000 Similar to MYC1 137 1e-32
Os01g0915600 Similar to TA1 protein (Fragment) 122 2e-28
Os09g0501600 Similar to MYC1 122 4e-28
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 122 4e-28
Os08g0524800 Similar to TA1 protein (Fragment) 119 3e-27
Os06g0275600 Similar to TA1 protein (Fragment) 115 5e-26
Os09g0474100 Similar to TA1 protein (Fragment) 114 9e-26
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 113 2e-25
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 109 2e-24
Os03g0802900 Similar to MYC1 105 3e-23
Os08g0487700 Similar to TA1 protein (Fragment) 105 4e-23
Os06g0613500 Similar to Helix-loop-helix protein homolog 73 2e-13
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 532 bits (1370), Expect = e-151, Method: Compositional matrix adjust.
Identities = 263/309 (85%), Positives = 263/309 (85%)
Query: 1 PLPRRSSTPLFSEETKLPINNTKKFXXXXXXXXXSNGRLLTTNDPNISSFFLYNHSHGSX 60
PLPRRSSTPLFSEETKLPINNTKKF SNGRLLTTNDPNISSFFLYNHSHGS
Sbjct: 1 PLPRRSSTPLFSEETKLPINNTKKFQTQRVQQQQSNGRLLTTNDPNISSFFLYNHSHGSQ 60
Query: 61 XXXXXXXXXXXIVEDASLESSVSAVLDTSPSVDRKRKAAEDSAHSKDSCKDGKSRRGKKA 120
IVEDASLESSVSAVLDTSPSVDRKRKAAEDSAHSKDSCKDGKSRRGKKA
Sbjct: 61 APQPANAAAAAIVEDASLESSVSAVLDTSPSVDRKRKAAEDSAHSKDSCKDGKSRRGKKA 120
Query: 121 SKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSLAXXXXXXXXXXXXXMLQALVPGCDKV 180
SKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSLA MLQALVPGCDKV
Sbjct: 121 SKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKV 180
Query: 181 TGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLYGFGMDSDGLHDQKIGGMFQEALAM 240
TGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLYGFGMDSDGLHDQKIGGMFQEALAM
Sbjct: 181 TGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLYGFGMDSDGLHDQKIGGMFQEALAM 240
Query: 241 PNPVLNQSSPAPSQAIMDXXXXXXXXXXXXHGAISFSQDNGSYLMQAVGEPRQQEMLNQL 300
PNPVLNQSSPAPSQAIMD HGAISFSQDNGSYLMQAVGEPRQQEMLNQL
Sbjct: 241 PNPVLNQSSPAPSQAIMDTTSTTSYSLQSQHGAISFSQDNGSYLMQAVGEPRQQEMLNQL 300
Query: 301 VFNNMCSFQ 309
VFNNMCSFQ
Sbjct: 301 VFNNMCSFQ 309
>Os09g0510500 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 282
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/274 (58%), Positives = 184/274 (67%), Gaps = 27/274 (9%)
Query: 51 FLYNH-SHGSXXXXXXXXXXXXIVEDASLESSVSAVLDTSPSVDRKRKAAED------SA 103
FL+ H SHG I EDAS+E+S S VLDTSP D+KRK E+ SA
Sbjct: 21 FLFCHGSHGGAATTTAPA----IPEDASMETS-SVVLDTSPQ-DKKRKPREEDTASLNSA 74
Query: 104 HSKDSCKDGKSRRGKKASKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSLAXXXXXXXX 163
HSK++ ++G+ R GKK S++ E+E P+G+IHVRARRGQATDSHSLA
Sbjct: 75 HSKEAKENGRKRGGKKHSRD-----QMEEEAPQGFIHVRARRGQATDSHSLAERVRRERI 129
Query: 164 XXXXXMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLYGFGMDSD 223
MLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIAS+SPVLYGFG+DSD
Sbjct: 130 SERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASLSPVLYGFGIDSD 189
Query: 224 GL--HDQKIGGMFQEALAMPNPVLNQ-SSPAPSQAIMDXXXXX-XXXXXXXHGAI---SF 276
H QK+ GMF EA+A+P VLN+ SSPA S AIMD G S
Sbjct: 190 AFSDHSQKMEGMFHEAVAIPASVLNRGSSPAQSHAIMDTSNTSPTPYTLQVQGGSNNNSL 249
Query: 277 SQDNGSYLMQAVGEPRQQEMLNQLVFNN-MCSFQ 309
SQDNGSY+MQ VGEPR QE+ NQ+V NN MCSFQ
Sbjct: 250 SQDNGSYIMQTVGEPR-QELFNQVVLNNYMCSFQ 282
>Os05g0103000 Similar to MYC1
Length = 339
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 73/93 (78%)
Query: 127 KSTTEDEPPKGYIHVRARRGQATDSHSLAXXXXXXXXXXXXXMLQALVPGCDKVTGKALI 186
K EPP GYIHVRARRGQATDSHSLA MLQ+LVPGCDKVTGKAL+
Sbjct: 166 KEAAGGEPPAGYIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALM 225
Query: 187 LDEIINYVQSLQNQVEFLSMRIASMSPVLYGFG 219
LDEII+YVQSLQNQVEFLSM++AS+SP++Y FG
Sbjct: 226 LDEIISYVQSLQNQVEFLSMKLASLSPLMYEFG 258
>Os01g0915600 Similar to TA1 protein (Fragment)
Length = 481
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 3/118 (2%)
Query: 98 AAEDSAHSKDSCKDGKSRRGKKASKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSLAXX 157
A E+S K + + ++ GKK K+ S+ EPPK YIHVRARRG+ATDSHSLA
Sbjct: 237 AEENSGKGKAAQSNSENGGGKKQGKD---SSSKPPEPPKDYIHVRARRGEATDSHSLAER 293
Query: 158 XXXXXXXXXXXMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVL 215
+LQ LVPGC+KV GKA++LDEIINYVQSLQ QVEFLSM++A+++P L
Sbjct: 294 VRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQL 351
>Os09g0501600 Similar to MYC1
Length = 366
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 86/125 (68%), Gaps = 4/125 (3%)
Query: 93 DRKRKAAEDSAHSKDSCKDGKSRRGKKASKEVEEKSTTE--DEPPKGYIHVRARRGQATD 150
D K+ AE + +++ DG G + K+ + K++++ EPPK Y+HVRARRGQATD
Sbjct: 126 DSKKCKAEVNPKVEEAASDGSV--GDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQATD 183
Query: 151 SHSLAXXXXXXXXXXXXXMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIAS 210
SHSLA +LQ LVPGC+KV GKAL+LDEIINYVQSLQ QVEFLSM++A+
Sbjct: 184 SHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLAT 243
Query: 211 MSPVL 215
++P L
Sbjct: 244 VNPQL 248
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 66/83 (79%)
Query: 133 EPPKGYIHVRARRGQATDSHSLAXXXXXXXXXXXXXMLQALVPGCDKVTGKALILDEIIN 192
EP K YIHVRARRGQATDSHSLA +LQ+LVPGC+K+TGKAL+LDEIIN
Sbjct: 73 EPAKDYIHVRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIIN 132
Query: 193 YVQSLQNQVEFLSMRIASMSPVL 215
YVQSLQ QVEFLSM++A+M+P L
Sbjct: 133 YVQSLQRQVEFLSMKLATMNPQL 155
>Os08g0524800 Similar to TA1 protein (Fragment)
Length = 405
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 66/84 (78%)
Query: 133 EPPKGYIHVRARRGQATDSHSLAXXXXXXXXXXXXXMLQALVPGCDKVTGKALILDEIIN 192
EPPK Y+HVRARRGQATDSHSLA +LQ LVPGC+KV GKAL+LDEIIN
Sbjct: 196 EPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIIN 255
Query: 193 YVQSLQNQVEFLSMRIASMSPVLY 216
YVQSLQ QVEFLSM++A+++P+ +
Sbjct: 256 YVQSLQRQVEFLSMKLATVNPLDF 279
>Os06g0275600 Similar to TA1 protein (Fragment)
Length = 437
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 8/123 (6%)
Query: 98 AAEDSAHSKDSCKDGKSRR-----GKKASKEVEEKSTTEDEPPKGYIHVRARRGQATDSH 152
A SA + + G+ +R GK + K++++ + + P + YIHVRARRGQAT+SH
Sbjct: 215 ATVGSAQKNEDDEKGEPKRSSVASGKSSGKQIKDNAGS---PKEDYIHVRARRGQATNSH 271
Query: 153 SLAXXXXXXXXXXXXXMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMS 212
SLA LQ LVPGC KVTGKA++LDEIINYVQSLQ QVEFLSM++AS++
Sbjct: 272 SLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVN 331
Query: 213 PVL 215
P L
Sbjct: 332 PTL 334
>Os09g0474100 Similar to TA1 protein (Fragment)
Length = 428
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 76/118 (64%)
Query: 98 AAEDSAHSKDSCKDGKSRRGKKASKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSLAXX 157
+A +S HSKD ++ + + T + + YIHVRARRGQAT+SHSLA
Sbjct: 205 SANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHSLAER 264
Query: 158 XXXXXXXXXXXMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVL 215
+LQ LVPGC KVTGKA++LDEIINYVQSLQ QVEFLSM++A+++P L
Sbjct: 265 LRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRL 322
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 73/115 (63%), Gaps = 11/115 (9%)
Query: 112 GKSRRGKKASKEVEEKSTTEDEPPKG-----------YIHVRARRGQATDSHSLAXXXXX 160
G+ R + +K+ E ++ +D P YIHVRARRGQATDSHSLA
Sbjct: 124 GRPERARPGAKKKAEVASPKDSPATSASTVTAGQKTDYIHVRARRGQATDSHSLAERVRR 183
Query: 161 XXXXXXXXMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVL 215
LQ LVPGC+KVTGKA +LDEIINYVQSLQ QVEFLSM+IA+ +PV+
Sbjct: 184 ERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQVEFLSMKIAASNPVV 238
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 118 KKASK-EVEEKSTTEDEPPKGYIHVRARRGQATDSHSLAXXXXXXXXXXXXXMLQALVPG 176
K SK + +E S+ D + Y+HVRA+RGQAT+SHSLA +LQ LVPG
Sbjct: 123 KSCSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPG 182
Query: 177 CDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVL 215
C K+TGKA++LDEIINYVQSLQ QVEFLSM++A+++P L
Sbjct: 183 CSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPEL 221
>Os03g0802900 Similar to MYC1
Length = 265
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 72/117 (61%)
Query: 95 KRKAAEDSAHSKDSCKDGKSRRGKKASKEVEEKSTTEDEPPKGYIHVRARRGQATDSHSL 154
KR A S+ S + + ASK ++ + P + YIHVRARRGQATDSHSL
Sbjct: 90 KRFKASKSSGDNSSLRTEAETDSRNASKSGDQNPPPPEPPKQDYIHVRARRGQATDSHSL 149
Query: 155 AXXXXXXXXXXXXXMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASM 211
A +LQ LVPGC+KV GKA +LDEIINY+Q+LQ QVEFLSM++ ++
Sbjct: 150 AERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVEFLSMKLEAV 206
>Os08g0487700 Similar to TA1 protein (Fragment)
Length = 365
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 61/78 (78%)
Query: 136 KGYIHVRARRGQATDSHSLAXXXXXXXXXXXXXMLQALVPGCDKVTGKALILDEIINYVQ 195
+GY HVRAR+GQAT++HSLA +LQ LVPGC KVTGKAL+LDEIINYVQ
Sbjct: 171 EGYSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQ 230
Query: 196 SLQNQVEFLSMRIASMSP 213
SLQ QVEFLSM++++++P
Sbjct: 231 SLQRQVEFLSMKLSAVNP 248
>Os06g0613500 Similar to Helix-loop-helix protein homolog
Length = 154
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 46/54 (85%)
Query: 169 MLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLYGFGMDS 222
+L+ LVPGC KV+G AL+LDEIIN+VQSLQ QVE+LSMR+A+++P + G+D+
Sbjct: 3 LLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDN 56
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,715,409
Number of extensions: 306886
Number of successful extensions: 1036
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 14
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)