Os01g0915600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TA1 protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os01g0915600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TA1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.55 | 0.337 | 11.9 | 0.0215 | 0.607 | -1.19 | 1.41 | -0.353 | -0.0694 | 4.73 | 52 | 721 | -- | -- |
| 51.69 | 0.335 | 11.9 | 0.00219 | 0.6 | -1.18 | 1.32 | -- | -0.0722 | 4.59 | 51.64 | 720 | -- | -- |
| 55.23 | 0.346 | 11.9 | -0.00399 | 0.566 | -0.956 | -- | -0.139 | -0.0741 | 3.54 | 51.72 | 734 | -- | -- |
| 55.18 | 0.346 | 11.9 | -0.00214 | 0.541 | -0.963 | -- | -- | -0.0703 | 3.45 | 49 | 744 | -- | -- |
| 62.42 | 0.368 | 11.9 | 0.0515 | -- | -1.08 | -- | 0.174 | -0.0483 | -- | 49.02 | 1047 | -- | -- |
| 67.17 | 0.384 | 11.9 | 0.0384 | 0.594 | -- | 0.0422 | -- | -0.0535 | 0.475 | -- | -- | -- | -- |
| 67.18 | 0.384 | 11.9 | 0.0369 | 0.594 | -- | -- | -- | -0.0536 | 0.45 | -- | -- | -- | -- |
| 61.78 | 0.366 | 11.9 | -0.0149 | -- | -1.15 | -- | -- | -0.0811 | -- | 48 | 1035 | -- | -- |
| 55.18 | 0.346 | 11.9 | -- | 0.54 | -0.958 | -- | -- | -0.0716 | 3.43 | 49.01 | 744 | -- | -- |
| 89.35 | 0.442 | 11.9 | 0.0573 | -- | -- | -- | -- | -0.0438 | -- | -- | -- | -- | -- |
| 67.22 | 0.384 | 11.9 | -- | 0.595 | -- | -- | -- | -0.0577 | 0.453 | -- | -- | -- | -- |
| 61.79 | 0.366 | 11.9 | -- | -- | -1.15 | -- | -- | -0.0768 | -- | 48 | 1034 | -- | -- |
| 89.44 | 0.441 | 11.9 | -- | -- | -- | -- | -- | -0.0501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.94 | humidity | 50 | 720 | > th | dose dependent | rect. | 4 | 16 |
| 21 | 49.32 | humidity | 50 | 720 | > th | dose dependent | sin | 1 | NA |
| 30 | 49.55 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 35 | 49.66 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 7 |
| 49 | 49.92 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 52 | 49.95 | humidity | 90 | 270 | < th | dose dependent | rect. | 14 | 9 |
| 66 | 50.21 | temperature | 30 | 720 | < th | dose independent | sin | 19 | NA |
| 71 | 50.29 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 76 | 50.32 | humidity | 70 | 720 | > th | dose independent | rect. | 4 | 16 |
| 105 | 50.54 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 15 |
| 129 | 50.68 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 157 | 50.87 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 164 | 50.88 | humidity | 90 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 173 | 50.92 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 11 |
| 176 | 50.93 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 15 |
| 188 | 50.97 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 16 |
| 206 | 51.04 | humidity | 80 | 90 | < th | dose dependent | rect. | 17 | 2 |
| 217 | 51.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 8 |
| 227 | 51.09 | humidity | 90 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 260 | 51.18 | humidity | 50 | 270 | > th | dose dependent | sin | 18 | NA |
| 261 | 51.18 | humidity | 90 | 270 | < th | dose dependent | sin | 16 | NA |
| 295 | 51.26 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 373 | 51.45 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 12 |
| 374 | 51.45 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 20 |
| 391 | 51.49 | humidity | 90 | 720 | < th | dose dependent | sin | 19 | NA |
| 412 | 51.54 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 421 | 51.57 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 430 | 51.59 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 16 |
| 465 | 51.67 | humidity | 90 | 720 | < th | dose dependent | no | NA | NA |
| 470 | 51.69 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 2 |
| 479 | 51.70 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 507 | 51.74 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 532 | 51.79 | humidity | 50 | 90 | > th | dose dependent | sin | 15 | NA |
| 544 | 51.81 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 553 | 51.83 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 575 | 51.89 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 589 | 51.91 | humidity | 90 | 90 | < th | dose dependent | rect. | 17 | 7 |
| 622 | 51.98 | humidity | 70 | 720 | > th | dose independent | sin | 22 | NA |
| 639 | 52.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 665 | 52.07 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 7 |
| 718 | 52.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 732 | 52.19 | radiation | 40 | 720 | < th | dose independent | rect. | 13 | 8 |
| 733 | 52.19 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 747 | 52.22 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 15 |
| 751 | 52.23 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 17 |
| 757 | 52.26 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 20 |
| 839 | 52.37 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 862 | 52.41 | humidity | 80 | 720 | > th | dose independent | sin | 2 | NA |
| 876 | 52.43 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 16 |
| 977 | 52.54 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |