BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0915600 Os01g0915600|AK101063
(481 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0915600 Similar to TA1 protein (Fragment) 828 0.0
Os08g0524800 Similar to TA1 protein (Fragment) 263 2e-70
Os09g0501600 Similar to MYC1 233 3e-61
Os06g0275600 Similar to TA1 protein (Fragment) 164 1e-40
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 163 2e-40
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 154 1e-37
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 152 6e-37
Os08g0487700 Similar to TA1 protein (Fragment) 145 8e-35
Os03g0802900 Similar to MYC1 144 1e-34
Os09g0510500 Similar to Phytochrome-interacting factor 4 (B... 137 1e-32
Os05g0103000 Similar to MYC1 137 2e-32
Os08g0536800 Similar to TA1 protein (Fragment) 137 2e-32
Os06g0184000 92 6e-19
Os06g0193400 Similar to Helix-loop-helix protein homolog 92 1e-18
Os06g0613500 Similar to Helix-loop-helix protein homolog 89 8e-18
Os03g0797600 Similar to Helix-loop-helix protein homolog 88 1e-17
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 88 2e-17
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 74 3e-13
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 71 2e-12
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 70 2e-12
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 70 3e-12
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 69 1e-11
Os02g0795800 67 4e-11
>Os01g0915600 Similar to TA1 protein (Fragment)
Length = 481
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/481 (86%), Positives = 414/481 (86%)
Query: 1 MNCGPPDQLPPATAPSCFLNLNWDQSMDAAAGGHLDPALSSMVSSPASNSTGALHGISPQ 60
MNCGPPDQLPPATAPSCFLNLNWDQSMDAAAGGHLDPALSSMVSSPASNSTGALHGISPQ
Sbjct: 1 MNCGPPDQLPPATAPSCFLNLNWDQSMDAAAGGHLDPALSSMVSSPASNSTGALHGISPQ 60
Query: 61 PHYGGGTPLSSPPKLNLSMMGQFHHYAAPPQVXXXXXXXXXLPILENLMPMGHLDQFLAD 120
PHYGGGTPLSSPPKLNLSMMGQFHHYAAPPQV LPILENLMPMGHLDQFLAD
Sbjct: 61 PHYGGGTPLSSPPKLNLSMMGQFHHYAAPPQVGGGGGGGGGLPILENLMPMGHLDQFLAD 120
Query: 121 PGFAERAARLSGFDARXXXXXXXXXXXXPAQFGLPDAGAAGASKEMELGNTRDESSVSDP 180
PGFAERAARLSGFDAR PAQFGLPDAGAAGASKEMELGNTRDESSVSDP
Sbjct: 121 PGFAERAARLSGFDARGGGGGGGYGGAGPAQFGLPDAGAAGASKEMELGNTRDESSVSDP 180
Query: 181 APGGAEIPPKGASDXXXXXXXXXXXXXXXDSPMSTSAAKEDSSGKRCKSTXXXXXXXXXX 240
APGGAEIPPKGASD DSPMSTSAAKEDSSGKRCKST
Sbjct: 181 APGGAEIPPKGASDGNARKRKASGKGKGKDSPMSTSAAKEDSSGKRCKSTEESNAAAEEN 240
Query: 241 XGKGKAAQSNSENXXXXXXXXXXXXXXXXXXXXYIHVRARRGEATDSHSLAERVRREKIS 300
GKGKAAQSNSEN YIHVRARRGEATDSHSLAERVRREKIS
Sbjct: 241 SGKGKAAQSNSENGGGKKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKIS 300
Query: 301 QRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLL 360
QRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLL
Sbjct: 301 QRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLL 360
Query: 361 AKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLTNGMDNQGSMHPLDPAFCR 420
AKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLTNGMDNQGSMHPLDPAFCR
Sbjct: 361 AKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLTNGMDNQGSMHPLDPAFCR 420
Query: 421 PMGSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNSYNGSLQTVHMKME 480
PMGSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNSYNGSLQTVHMKME
Sbjct: 421 PMGSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNSYNGSLQTVHMKME 480
Query: 481 L 481
L
Sbjct: 481 L 481
>Os08g0524800 Similar to TA1 protein (Fragment)
Length = 405
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/371 (43%), Positives = 206/371 (55%), Gaps = 13/371 (3%)
Query: 114 LDQFLADPGFAERAARLSGFDARXXXXXXXXXXXXPAQFGLPDAGAAGASKEMELGNTRD 173
LD+ DPGFAERAARLS F+ FG+P A + G +R+
Sbjct: 45 LDKLCGDPGFAERAARLSSFNNGGGGVGQRYGGAGAGLFGMPPP----APGDFAGGGSRE 100
Query: 174 ESSVSDPAPGGAEIPPKGASDXXXXXXXXXXXXXXXDSPMSTSAAKEDSSGKRCKSTXXX 233
SSVSDPA + A P +++S GKRCK+
Sbjct: 101 ASSVSDPASSAMKDAAANAKKRKSTAAAAAAAKGKGKEP--PVGEEKESDGKRCKTGNGE 158
Query: 234 XXXXXXXXGKGKAAQSNSENXXXXXXXXXXXXXXXXXX--XXYIHVRARRGEATDSHSLA 291
+ + S+ E+ Y+HVRARRG+ATDSHSLA
Sbjct: 159 KESSVKPKAEQAGSDSSVEDGGGGGQKQGKGKNAKPVEPPKDYVHVRARRGQATDSHSLA 218
Query: 292 ERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQL 351
ERVRRE+ISQRMK+LQDLVPGCNKV+GKA+MLDEIINYVQSLQRQVEFLSMKLATVNP L
Sbjct: 219 ERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEFLSMKLATVNP-L 277
Query: 352 DFNNLPNLLAKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLTNGMDNQGSM 411
DF+NLP LL KDM Q+C P SS F LE+S + + +QG+ N M++Q ++
Sbjct: 278 DFSNLPTLLQKDMFQACGPSASSVFSLESSNSAFRF---AEQGDVFQQFAQNSMESQCTL 334
Query: 412 HPLDPAFCRPM-GSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNSYNG 470
+ LD A + + + F +G + A Q FW+DDLQSV ++ GQSQE S+ +++G
Sbjct: 335 NQLDLALSQATNAAQYAFQDGTAGANLQQRNFWEDDLQSVFHIENGQSQENGVSAPNFHG 394
Query: 471 SLQTVHMKMEL 481
Q HMKME
Sbjct: 395 QQQAGHMKMEF 405
>Os09g0501600 Similar to MYC1
Length = 366
Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 189/375 (50%), Gaps = 46/375 (12%)
Query: 114 LDQFLADPGFAERAARLSGFDARXXXXXXXXXXXXPAQFGLPDAGAAGASKEMELGNTRD 173
L+ PGFAERAARL G A FGLP G A G +R+
Sbjct: 31 LETLCGGPGFAERAARLCGGGA--------------GLFGLPAVGNAERG-----GCSRE 71
Query: 174 ESSVSDPA------PGGAEIPPKGASDXXXXXXXXXXXXXXXDSPMSTSAAKEDSSGKRC 227
SSVSDPA GG + A SP AK S K+C
Sbjct: 72 GSSVSDPAWAHATGGGGDNARKRKAPASAAAGKDKDAVVGGGSSPCEVGEAKAPDS-KKC 130
Query: 228 KSTXXXXXXXXXXXGKGKAAQSNSENXXXXXXXXXXXXXXXXXXXXYIHVRARRGEATDS 287
K+ G S + Y+HVRARRG+ATDS
Sbjct: 131 KAEVNPKVEEAASDG------SVGDRVQKQGKGKNSSKPAAEPPKDYVHVRARRGQATDS 184
Query: 288 HSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATV 347
HSLAERVRREKISQRMK+LQDLVPGCNKVVGKA+MLDEIINYVQSLQ+QVEFLSMKLATV
Sbjct: 185 HSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLATV 244
Query: 348 NPQLDFNNLPNLLAKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQGNPLGCGLTNGMDN 407
NPQLDF NL LL KDM QSC P +S FPLE++G P+ +Q G G M+N
Sbjct: 245 NPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQADFFQSFGLG---AMEN 301
Query: 408 QGSMHPLDPAFCRPMGSHHPFLNGVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNS 467
Q S+ + A + + F D W+D+ Q + QSQE A S+ +
Sbjct: 302 QCSLDLANTALPHTGSTQYAFQKQQRD-------LWEDN---TFQYNDEQSQEDAVSAPN 351
Query: 468 YNGSLQTV-HMKMEL 481
++G LQ H ++E
Sbjct: 352 FDGQLQAADHTEIEF 366
>Os06g0275600 Similar to TA1 protein (Fragment)
Length = 437
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/103 (77%), Positives = 89/103 (86%), Gaps = 1/103 (0%)
Query: 274 YIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSL 333
YIHVRARRG+AT+SHSLAERVRREKIS+RMK LQDLVPGC+KV GKAVMLDEIINYVQSL
Sbjct: 257 YIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSL 316
Query: 334 QRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHF 376
QRQVEFLSMKLA+VNP LDF N+ +L+KD+ Q SS F
Sbjct: 317 QRQVEFLSMKLASVNPTLDF-NIERILSKDIFQCRGTTASSAF 358
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 94/124 (75%), Gaps = 3/124 (2%)
Query: 274 YIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSL 333
YIHVRARRG+ATDSHSLAERVRRE+IS+RMKLLQ LVPGCNK+ GKA+MLDEIINYVQSL
Sbjct: 78 YIHVRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSL 137
Query: 334 QRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHFPLETSGAPLPYINQPQQ 393
QRQVEFLSMKLAT+NPQLDF++ + +KDM P S P T+ Y P
Sbjct: 138 QRQVEFLSMKLATMNPQLDFDSH-YMPSKDMSHMPVPAYPSSDPTTTTA--FSYTGSPAT 194
Query: 394 GNPL 397
+P
Sbjct: 195 ADPF 198
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 85/91 (93%), Gaps = 1/91 (1%)
Query: 274 YIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSL 333
Y+HVRA+RG+AT+SHSLAER+RR+KIS+RMKLLQDLVPGC+K+ GKAVMLDEIINYVQSL
Sbjct: 144 YVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSL 203
Query: 334 QRQVEFLSMKLATVNPQLDFNNLPNLLAKDM 364
QRQVEFLSMKLATVNP+L F ++ +L+K M
Sbjct: 204 QRQVEFLSMKLATVNPELSF-DIEQILSKQM 233
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/98 (71%), Positives = 85/98 (86%), Gaps = 1/98 (1%)
Query: 274 YIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSL 333
YIHVRARRG+ATDSHSLAERVRRE+IS+RM+ LQ+LVPGCNKV GKA MLDEIINYVQSL
Sbjct: 161 YIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSL 220
Query: 334 QRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQ-SCSP 370
Q+QVEFLSMK+A NP ++FN + +L + + Q +C+P
Sbjct: 221 QKQVEFLSMKIAASNPVVNFNIVEDLFGRQLSQAACNP 258
>Os08g0487700 Similar to TA1 protein (Fragment)
Length = 365
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 94/116 (81%), Gaps = 12/116 (10%)
Query: 274 YIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSL 333
Y HVRAR+G+AT++HSLAER+RREKIS+RMKLLQDLVPGC+KV GKA+MLDEIINYVQSL
Sbjct: 173 YSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSL 232
Query: 334 QRQVEFLSMKLATVNPQLDFNNLPNLL--AKDMHQSCSPLQSSHFPLETSGAPLPY 387
QRQVEFLSMKL+ VNP++D ++ +L+ +KD+ + FP + S AP+ +
Sbjct: 233 QRQVEFLSMKLSAVNPRIDL-DIESLVNNSKDVLR---------FPGQPSSAPMGF 278
>Os03g0802900 Similar to MYC1
Length = 265
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 73/79 (92%)
Query: 274 YIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSL 333
YIHVRARRG+ATDSHSLAER RREKIS+RMK+LQDLVPGCNKV+GKA +LDEIINY+Q+L
Sbjct: 133 YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQAL 192
Query: 334 QRQVEFLSMKLATVNPQLD 352
QRQVEFLSMKL VN ++
Sbjct: 193 QRQVEFLSMKLEAVNAHVN 211
>Os09g0510500 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 282
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 97/141 (68%), Gaps = 21/141 (14%)
Query: 274 YIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSL 333
+IHVRARRG+ATDSHSLAERVRRE+IS+RM++LQ LVPGC+KV GKA++LDEIINYVQSL
Sbjct: 104 FIHVRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSL 163
Query: 334 QRQVEFLSMKLATVNPQLD-------------------FNNLPNLLAKDMHQSCSPLQSS 374
Q QVEFLSM++A+++P L F+ + A +++ SP Q S
Sbjct: 164 QNQVEFLSMRIASLSPVLYGFGIDSDAFSDHSQKMEGMFHEAVAIPASVLNRGSSPAQ-S 222
Query: 375 HFPLETSG-APLPYINQPQQG 394
H ++TS +P PY Q Q G
Sbjct: 223 HAIMDTSNTSPTPYTLQVQGG 243
>Os05g0103000 Similar to MYC1
Length = 339
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 80/92 (86%), Gaps = 4/92 (4%)
Query: 274 YIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSL 333
YIHVRARRG+ATDSHSLAERVRREKIS+RMK+LQ LVPGC+KV GKA+MLDEII+YVQSL
Sbjct: 177 YIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIISYVQSL 236
Query: 334 QRQVEFLSMKLATVNPQLDFNNLPNLLAKDMH 365
Q QVEFLSMKLA+++P L + P + DMH
Sbjct: 237 QNQVEFLSMKLASLSP-LMYEFGPGI---DMH 264
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/78 (78%), Positives = 74/78 (94%)
Query: 274 YIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSL 333
YIHVRARRG+ATDSHSLAERVRRE+IS+RM++LQ LVPGC+KV GKA++LDEIINYVQSL
Sbjct: 138 YIHVRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSL 197
Query: 334 QRQVEFLSMKLATVNPQL 351
Q QVEFLSM++A+++P L
Sbjct: 198 QNQVEFLSMRIASMSPVL 215
>Os06g0184000
Length = 430
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 55/67 (82%), Gaps = 1/67 (1%)
Query: 276 HVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQR 335
VRARRG+ATD HS+AER+RRE+I++RMK LQ+LVP NK KA MLDEII+YV+ LQ
Sbjct: 213 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANK-TDKASMLDEIIDYVKFLQL 271
Query: 336 QVEFLSM 342
QV+ LSM
Sbjct: 272 QVKVLSM 278
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 276 HVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQR 335
RARRG+ATD HS+AER+RREKIS+RMK LQ LVP NK KA MLDEII+YV+ LQ
Sbjct: 315 RTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK-ADKASMLDEIIDYVKFLQL 373
Query: 336 QVEFLSM 342
QV+ LSM
Sbjct: 374 QVKVLSM 380
>Os06g0613500 Similar to Helix-loop-helix protein homolog
Length = 154
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 303 MKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAK 362
M+LL++LVPGC+KV G A++LDEIIN+VQSLQRQVE+LSM+LA VNP++DF L N L
Sbjct: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
Query: 363 D 363
+
Sbjct: 61 E 61
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 55/67 (82%), Gaps = 1/67 (1%)
Query: 276 HVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQR 335
VRARRG+ATD HS+AER+RRE+I++RM+ LQ+LVP NK +A MLDEI++YV+ L+
Sbjct: 132 KVRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNK-TDRAAMLDEILDYVKFLRL 190
Query: 336 QVEFLSM 342
QV+ LSM
Sbjct: 191 QVKVLSM 197
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 54/65 (83%), Gaps = 2/65 (3%)
Query: 276 HVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVV--GKAVMLDEIINYVQSL 333
VRARRG+ATD HS+AER+RRE+I++RMK LQ+LVP NK++ KA MLDEII+YV+ L
Sbjct: 249 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFL 308
Query: 334 QRQVE 338
Q QV+
Sbjct: 309 QLQVK 313
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 11/99 (11%)
Query: 280 RRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEF 339
+R + H+L+ER RR++I+++M+ LQ+L+P CNK + KA MLDE I Y+++LQ QV+
Sbjct: 381 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNK-IDKASMLDEAIEYLKTLQLQVQM 439
Query: 340 LSMKLATVNPQLDFNNLPNLLAKDM-HQSCSPLQSSHFP 377
+SM P P LL M H P+ +HFP
Sbjct: 440 MSMGTGLCIP-------PMLLPTAMQHLQIPPM--AHFP 469
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 277 VRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQ 336
+RA+RG AT S+AERVRR +IS+R++ LQ+LVP K A MLD ++Y++ LQ+Q
Sbjct: 319 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQKQ 378
Query: 337 VEFL 340
V+ L
Sbjct: 379 VKVL 382
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 279 ARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVE 338
++R + H+L+ER RR++I+++M+ LQ+L+P CNK + KA ML+E I Y+++LQ QV+
Sbjct: 331 SKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNK-IDKASMLEEAIEYLKTLQLQVQ 389
Query: 339 FLSM 342
+SM
Sbjct: 390 MMSM 393
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 279 ARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVE 338
A+R A + H+L+ER RR++I+++MK LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 265 AKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 323
Query: 339 FLSMKLATVNPQLDF 353
+ M P + F
Sbjct: 324 MMWMGGGMAPPAVMF 338
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 279 ARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVE 338
++R A + H+L+E+ RR KI+++MK LQ L+P NK KA MLDE I Y++ LQ QV+
Sbjct: 22 SKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNK-TDKASMLDEAIEYLKQLQLQVQ 80
Query: 339 FLSMK 343
LSM+
Sbjct: 81 MLSMR 85
>Os02g0795800
Length = 463
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 47/80 (58%), Gaps = 23/80 (28%)
Query: 285 TDSHSLAERV----------------------RREKISQRMKLLQDLVPGCNKVVGKAVM 322
TD HS+AERV RRE+I++RMK LQ+LVP NK KA M
Sbjct: 220 TDPHSIAERVYHSPTTFPFSPPFFIASMPCCLRRERIAERMKALQELVPNANK-TDKASM 278
Query: 323 LDEIINYVQSLQRQVEFLSM 342
LDEII+YV+ LQ QV+ LSM
Sbjct: 279 LDEIIDYVKFLQLQVKVLSM 298
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,879,534
Number of extensions: 674616
Number of successful extensions: 1627
Number of sequences better than 1.0e-10: 24
Number of HSP's gapped: 1634
Number of HSP's successfully gapped: 24
Length of query: 481
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 376
Effective length of database: 11,553,331
Effective search space: 4344052456
Effective search space used: 4344052456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)