Os06g0275600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TA1 protein (Fragment).
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Os06g0275600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TA1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.6 | 0.334 | 6.74 | 0.087 | 0.378 | 0.612 | 0.206 | -0.0656 | 0.487 | 2 | 39.49 | 46 | -- | -- |
| 50.54 | 0.331 | 6.74 | 0.0877 | 0.376 | 0.618 | 0.188 | -- | 0.489 | 2.01 | 39.53 | 48 | -- | -- |
| 50.68 | 0.332 | 6.74 | 0.0789 | 0.379 | 0.618 | -- | 0.0507 | 0.486 | 2.03 | 39.78 | 48 | -- | -- |
| 50.67 | 0.332 | 6.74 | 0.0815 | 0.376 | 0.62 | -- | -- | 0.489 | 2.05 | 39.5 | 49 | -- | -- |
| 55.25 | 0.346 | 6.72 | 0.18 | -- | 0.657 | -- | 0.159 | 0.588 | -- | 21.46 | 134 | -- | -- |
| 57.87 | 0.357 | 6.74 | 0.114 | 0.548 | -- | 0.1 | -- | 0.489 | 1.48 | -- | -- | -- | -- |
| 57.91 | 0.356 | 6.74 | 0.111 | 0.548 | -- | -- | -- | 0.489 | 1.5 | -- | -- | -- | -- |
| 54.4 | 0.344 | 6.73 | 0.119 | -- | 0.634 | -- | -- | 0.556 | -- | 19.66 | 133 | -- | -- |
| 50.84 | 0.332 | 6.74 | -- | 0.378 | 0.624 | -- | -- | 0.479 | 2.06 | 39.53 | 49 | -- | -- |
| 76.32 | 0.408 | 6.74 | 0.133 | -- | -- | -- | -- | 0.501 | -- | -- | -- | -- | -- |
| 58.23 | 0.357 | 6.75 | -- | 0.55 | -- | -- | -- | 0.477 | 1.5 | -- | -- | -- | -- |
| 54.76 | 0.345 | 6.74 | -- | -- | 0.605 | -- | -- | 0.508 | -- | 19.67 | 133 | -- | -- |
| 76.78 | 0.409 | 6.74 | -- | -- | -- | -- | -- | 0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 2 | 49.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 3 | 49.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 4 | 49.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 15 | 49.43 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 16 | 49.55 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 18 | 49.61 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 24 | 49.68 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 27 | 49.68 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 40 | 49.75 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 41 | 49.75 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 46 | 49.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 55 | 49.78 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 86 | 49.87 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 9 | 13 |
| 102 | 49.89 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 104 | 49.89 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 15 | 8 |
| 112 | 49.90 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 20 | NA |
| 174 | 49.97 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 175 | 49.97 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 176 | 49.97 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 178 | 49.97 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 205 | 49.99 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 18 | NA |
| 242 | 50.01 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 18 | NA |
| 251 | 50.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 333 | 50.06 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 15 | 14 |
| 569 | 50.16 | atmosphere | 1015 | 43200 | > th | dose dependent | no | NA | NA |
| 602 | 50.17 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 616 | 50.17 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 618 | 50.17 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 728 | 50.21 | radiation | 1 | 14400 | < th | dose independent | rect. | 12 | 12 |
| 892 | 50.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 974 | 50.27 | radiation | 1 | 14400 | < th | dose dependent | sin | 17 | NA |