BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0275600 Os06g0275600|AK103853
(437 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0275600 Similar to TA1 protein (Fragment) 892 0.0
Os09g0474100 Similar to TA1 protein (Fragment) 228 7e-60
Os08g0487700 Similar to TA1 protein (Fragment) 199 4e-51
Os01g0915600 Similar to TA1 protein (Fragment) 176 4e-44
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 175 6e-44
Os09g0501600 Similar to MYC1 174 2e-43
Os08g0524800 Similar to TA1 protein (Fragment) 170 2e-42
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 164 2e-40
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 159 4e-39
Os03g0802900 Similar to MYC1 149 5e-36
Os05g0103000 Similar to MYC1 148 7e-36
Os08g0536800 Similar to TA1 protein (Fragment) 144 1e-34
Os09g0510500 Similar to Phytochrome-interacting factor 4 (B... 141 8e-34
Os06g0184000 93 4e-19
Os06g0193400 Similar to Helix-loop-helix protein homolog 90 3e-18
Os03g0797600 Similar to Helix-loop-helix protein homolog 89 9e-18
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 87 2e-17
Os06g0613500 Similar to Helix-loop-helix protein homolog 84 2e-16
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 74 2e-13
Os08g0506700 Basic helix-loop-helix dimerisation region bHL... 72 7e-13
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 71 1e-12
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 71 2e-12
Os12g0589000 71 2e-12
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 70 2e-12
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 69 5e-12
Os01g0900800 Basic helix-loop-helix dimerisation region bHL... 68 1e-11
Os02g0795800 65 9e-11
>Os06g0275600 Similar to TA1 protein (Fragment)
Length = 437
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/437 (98%), Positives = 431/437 (98%)
Query: 1 MNEKDATDLEERSEASEHGQALSFHGGAMFLQEAQIASPXXXXXXLTSMANPFPIPPGLW 60
MNEKDATDLEERSEASEHGQALSFHGGAMFLQEAQIASP LTSMANPFPIPPGLW
Sbjct: 1 MNEKDATDLEERSEASEHGQALSFHGGAMFLQEAQIASPAAANNALTSMANPFPIPPGLW 60
Query: 61 NPPSHNMGLGETSFSSLLGMLSAGAPPPFVATPGFVDSTAGFPCYNGGNLGAMINHPFPG 120
NPPSHNMGLGETSFSSLLGMLSAGAPPPFVATPGFVDSTAGFPCYNGGNLGAMINHPFPG
Sbjct: 61 NPPSHNMGLGETSFSSLLGMLSAGAPPPFVATPGFVDSTAGFPCYNGGNLGAMINHPFPG 120
Query: 121 IHQPLGDFQNGVEPCREIEDIEIEGSKNVSQTGEKQQGDGETTHAVDSSSKELSMPGRNG 180
IHQPLGDFQNGVEPCREIEDIEIEGSKNVSQTGEKQQGDGETTHAVDSSSKELSMPGRNG
Sbjct: 121 IHQPLGDFQNGVEPCREIEDIEIEGSKNVSQTGEKQQGDGETTHAVDSSSKELSMPGRNG 180
Query: 181 GAGHDEGTRVSCSKKRKRSGQDGGVKHAEGGEQLATVGSAQKNEDDEKGEPKRSSVASGK 240
GAGHDEGTRVSCSKKRKRSGQDGGVKHAEGGEQLATVGSAQKNEDDEKGEPKRSSVASGK
Sbjct: 181 GAGHDEGTRVSCSKKRKRSGQDGGVKHAEGGEQLATVGSAQKNEDDEKGEPKRSSVASGK 240
Query: 241 SSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVT 300
SSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVT
Sbjct: 241 SSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVT 300
Query: 301 GKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDFNIERILSKDIFQCRGTTASSAFGF 360
GKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDFNIERILSKDIFQCRGTTASSAFGF
Sbjct: 301 GKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDFNIERILSKDIFQCRGTTASSAFGF 360
Query: 361 FPDIVHPRLHPPKYTQVGMPSIVNPTDAFGRVIHAPLGTNSAFKEPKHQMPNNLNGEFQD 420
FPDIVHPRLHPPKYTQVGMPSIVNPTDAFGRVIHAPLGTNSAFKEPKHQMPNNLNGEFQD
Sbjct: 361 FPDIVHPRLHPPKYTQVGMPSIVNPTDAFGRVIHAPLGTNSAFKEPKHQMPNNLNGEFQD 420
Query: 421 VIEMPFTHDHHGSNDQP 437
VIEMPFTHDHHGSNDQP
Sbjct: 421 VIEMPFTHDHHGSNDQP 437
>Os09g0474100 Similar to TA1 protein (Fragment)
Length = 428
Score = 228 bits (581), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 197/341 (57%), Gaps = 31/341 (9%)
Query: 89 FVATPGFVDSTAGFPCYNGGNLGAMINHPFPGIHQPLGDFQNGVEPCREIEDIEIEGSKN 148
F GF++ A C+ GG M P+ Q +GD G E + ++ +N
Sbjct: 97 FPVDSGFIERAARSTCFGGG---MMAGGPYGAADQAMGDAFGGT-----AEGL-MDHHRN 147
Query: 149 V-SQTGEKQQGDGETTHAVDSSSKELSMPGRNGGAGHDEGTRVSCSKKRKRSGQDGGVKH 207
V + E+ G+G + S E+ AG D ++ S SKKR+R + G
Sbjct: 148 VGNDKAEEFAGNGHD----EVPSSEV--------AGGDCSSKGSDSKKRRRPNEVMGTDQ 195
Query: 208 AEGGEQLATVGSAQKNEDDEKGEPKRSSVASGKSSGKQIKDNAGSPKEDYIHVRARRGQA 267
+ + + D+ E ++ GKS GK K+ + S KE+YIHVRARRGQA
Sbjct: 196 VHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQA 255
Query: 268 TNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKL 327
TNSHSLAER+RREKISERMK LQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKL
Sbjct: 256 TNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKL 315
Query: 328 ASVNPTLDFNIERILSKDIFQCRGTTASSAFGFFPDIVHPRLH--PPKYTQVGMPSIVNP 385
A+VNP LD NIE +LSKD+ + G SS+ GF P+++HP+L P G + NP
Sbjct: 316 ATVNPRLDLNIEGLLSKDLLRFPGVP-SSSIGFSPEMMHPQLQLSQPGLIHGGTAGMANP 374
Query: 386 TDAFGRVIHAPLGTNSAFKEPKHQMPNNLNGEFQDVIEMPF 426
D F R+I A LG QMP++LNG F DV +M +
Sbjct: 375 -DVFRRIIQAQLGAKDG-----SQMPHSLNGSFSDVSQMAY 409
>Os08g0487700 Similar to TA1 protein (Fragment)
Length = 365
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 131/262 (50%), Positives = 166/262 (63%), Gaps = 13/262 (4%)
Query: 174 SMPGRNGGAGHDEGTRVSCSKKRKRSGQDGGVKHAEGGEQLATVGSAQKNEDDEKGE--- 230
S P +GG G S SKKR RS + G HA LA G+ + D GE
Sbjct: 88 SFPVNSGGIVEPAGDCSSESKKR-RSDEIAGTDHANASNALADSGNETECSKDVNGEVIG 146
Query: 231 PKRSSVASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQ 290
P ++ A GKS GK KD + KE Y HVRAR+GQATN+HSLAER+RREKISERMK LQ
Sbjct: 147 PPATAAAGGKSKGKGAKDAGEAQKEGYSHVRARKGQATNNHSLAERLRREKISERMKLLQ 206
Query: 291 DLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDFNIERIL--SKDIFQ 348
DLVPGCSKVTGKA+MLDEIINYVQSLQRQVEFLSMKL++VNP +D +IE ++ SKD+ +
Sbjct: 207 DLVPGCSKVTGKALMLDEIINYVQSLQRQVEFLSMKLSAVNPRIDLDIESLVNNSKDVLR 266
Query: 349 CRGTTASSAFGF-FPDIVHP--RLHPPKYTQVGMPSIVNPTDAFGRVIHAPLGTNS-AFK 404
G +S+ GF F + P +L P Q G+ ++NP D F ++ + AF+
Sbjct: 267 FPGQPSSAPMGFSFSTEMMPGLQLSRPGILQGGVHGMINP-DVFTSLMQKQQQNDKGAFR 325
Query: 405 EPKHQMPNNLNGEFQDVIEMPF 426
EP QM L+G F++ +MP+
Sbjct: 326 EP--QMHQTLDGSFRNTAQMPY 345
>Os01g0915600 Similar to TA1 protein (Fragment)
Length = 481
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/180 (54%), Positives = 117/180 (65%), Gaps = 14/180 (7%)
Query: 193 SKKRKRSGQDGG---------VKHAEGGEQLATV----GSAQKNEDDEKGEPKRSSVASG 239
++KRK SG+ G K G++ + +A++N K S G
Sbjct: 197 ARKRKASGKGKGKDSPMSTSAAKEDSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGG 256
Query: 240 KSSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKV 299
K GK P +DYIHVRARRG+AT+SHSLAERVRREKIS+RMK LQDLVPGC+KV
Sbjct: 257 KKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKV 316
Query: 300 TGKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDF-NIERILSKDIFQCRGTTASSAF 358
GKAVMLDEIINYVQSLQRQVEFLSMKLA+VNP LDF N+ +L+KD+ Q SS F
Sbjct: 317 VGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHF 376
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/137 (65%), Positives = 104/137 (75%), Gaps = 4/137 (2%)
Query: 211 GEQLATVGSAQKNEDDEKGEPKRSSVASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNS 270
G+Q V S Q+ E+ K S K K+ + KEDY+HVRA+RGQATNS
Sbjct: 102 GDQQTEVSSQQERISMEEDNQKSCS----KMQSKEDSSDGDGTKEDYVHVRAKRGQATNS 157
Query: 271 HSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASV 330
HSLAER+RR+KISERMK LQDLVPGCSK+TGKAVMLDEIINYVQSLQRQVEFLSMKLA+V
Sbjct: 158 HSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATV 217
Query: 331 NPTLDFNIERILSKDIF 347
NP L F+IE+ILSK +
Sbjct: 218 NPELSFDIEQILSKQMM 234
>Os09g0501600 Similar to MYC1
Length = 366
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 97/117 (82%), Gaps = 1/117 (0%)
Query: 243 GKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGK 302
GK A P +DY+HVRARRGQAT+SHSLAERVRREKIS+RMK LQDLVPGC+KV GK
Sbjct: 157 GKNSSKPAAEPPKDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGK 216
Query: 303 AVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDF-NIERILSKDIFQCRGTTASSAF 358
A+MLDEIINYVQSLQ+QVEFLSMKLA+VNP LDF N+ +L KD+FQ G + +S F
Sbjct: 217 ALMLDEIINYVQSLQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVF 273
>Os08g0524800 Similar to TA1 protein (Fragment)
Length = 405
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/109 (76%), Positives = 95/109 (87%), Gaps = 2/109 (1%)
Query: 253 PKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINY 312
P +DY+HVRARRGQAT+SHSLAERVRRE+IS+RMK LQDLVPGC+KV GKA+MLDEIINY
Sbjct: 197 PPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINY 256
Query: 313 VQSLQRQVEFLSMKLASVNPTLDF-NIERILSKDIFQCRGTTASSAFGF 360
VQSLQRQVEFLSMKLA+VNP LDF N+ +L KD+FQ G +ASS F
Sbjct: 257 VQSLQRQVEFLSMKLATVNP-LDFSNLPTLLQKDMFQACGPSASSVFSL 304
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 93/115 (80%), Gaps = 7/115 (6%)
Query: 253 PKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINY 312
P +DYIHVRARRGQAT+SHSLAERVRRE+ISERMK LQ LVPGC+K+TGKA+MLDEIINY
Sbjct: 74 PAKDYIHVRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINY 133
Query: 313 VQSLQRQVEFLSMKLASVNPTLDFNIERILSKDI-------FQCRGTTASSAFGF 360
VQSLQRQVEFLSMKLA++NP LDF+ + SKD+ + T ++AF +
Sbjct: 134 VQSLQRQVEFLSMKLATMNPQLDFDSHYMPSKDMSHMPVPAYPSSDPTTTTAFSY 188
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 107/157 (68%), Gaps = 5/157 (3%)
Query: 212 EQLATVGSAQKNEDDEKGEPKRSSVASGKSS-GKQIKDNAGSPKEDYIHVRARRGQATNS 270
+Q+A + E G K++ VAS K S K DYIHVRARRGQAT+S
Sbjct: 115 DQMAAAVGKGRPERARPGAKKKAEVASPKDSPATSASTVTAGQKTDYIHVRARRGQATDS 174
Query: 271 HSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASV 330
HSLAERVRRE+ISERM+YLQ+LVPGC+KVTGKA MLDEIINYVQSLQ+QVEFLSMK+A+
Sbjct: 175 HSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQVEFLSMKIAAS 234
Query: 331 NPTLDFNIERILSKDIFQCRGTTASSAFGFFPDIVHP 367
NP ++FNI +D+F + + A+ P + P
Sbjct: 235 NPVVNFNI----VEDLFGRQLSQAACNPAALPAMALP 267
>Os03g0802900 Similar to MYC1
Length = 265
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/140 (58%), Positives = 94/140 (67%), Gaps = 7/140 (5%)
Query: 242 SGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTG 301
SG Q PK+DYIHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGC+KV G
Sbjct: 118 SGDQNPPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 177
Query: 302 KAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDFNIERILSKDIFQCRGTTASSAFGFF 361
KA +LDEIINY+Q+LQRQVEFLSMKL +VN ++ IE KD F + + F
Sbjct: 178 KASVLDEIINYIQALQRQVEFLSMKLEAVNAHVNNGIEAFPPKD-FGAQVYNTAPGLTFD 236
Query: 362 PDIVHPRLHPPKYTQVGMPS 381
P P +Y Q PS
Sbjct: 237 PQT------PREYAQGSTPS 250
>Os05g0103000 Similar to MYC1
Length = 339
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 120/202 (59%), Gaps = 32/202 (15%)
Query: 175 MPGRNGGA----GHDEGTRVSCSKKRKRSGQDGGVKHAEGGEQLATVGSAQKNEDDEKGE 230
+PG G G + S K RK + G+K E E+ A +++DD K
Sbjct: 107 VPGIQGSCPCSLGSTQDMDASWGKSRKHKRSNVGLKGLE--EKKARRVVLHQHDDDVK-- 162
Query: 231 PKRSSVASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQ 290
K++ A+G G P YIHVRARRGQAT+SHSLAERVRREKISERMK LQ
Sbjct: 163 -KKAKEAAG-----------GEPPAGYIHVRARRGQATDSHSLAERVRREKISERMKMLQ 210
Query: 291 DLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTL-DF--------NIERI 341
LVPGC KVTGKA+MLDEII+YVQSLQ QVEFLSMKLAS++P + +F ++ R
Sbjct: 211 SLVPGCDKVTGKALMLDEIISYVQSLQNQVEFLSMKLASLSPLMYEFGPGIDMHPDVLRQ 270
Query: 342 LSK---DIFQCRGTTASSAFGF 360
L+K ++ QC G S+
Sbjct: 271 LAKMPHEMVQCMGQMGSTGISL 292
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 94/123 (76%), Gaps = 8/123 (6%)
Query: 215 ATVGSAQKNEDDEKGEPKRSSVASGKSSGKQIKDNAGS---PKEDYIHVRARRGQATNSH 271
A SA + + G+ +R GK + K++++ + + P + YIHVRARRGQAT+SH
Sbjct: 98 AAEDSAHSKDSCKDGKSRR-----GKKASKEVEEKSTTEDEPPKGYIHVRARRGQATDSH 152
Query: 272 SLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVN 331
SLAERVRRE+ISERM+ LQ LVPGC KVTGKA++LDEIINYVQSLQ QVEFLSM++AS++
Sbjct: 153 SLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMS 212
Query: 332 PTL 334
P L
Sbjct: 213 PVL 215
>Os09g0510500 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 282
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 91/123 (73%), Gaps = 7/123 (5%)
Query: 212 EQLATVGSAQKNEDDEKGEPKRSSVASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNSH 271
E A++ SA E E G + K S Q+++ A + +IHVRARRGQAT+SH
Sbjct: 66 EDTASLNSAHSKEAKENGRKR----GGKKHSRDQMEEEA---PQGFIHVRARRGQATDSH 118
Query: 272 SLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVN 331
SLAERVRRE+ISERM+ LQ LVPGC KVTGKA++LDEIINYVQSLQ QVEFLSM++AS++
Sbjct: 119 SLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASLS 178
Query: 332 PTL 334
P L
Sbjct: 179 PVL 181
>Os06g0184000
Length = 430
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 56/67 (83%), Gaps = 1/67 (1%)
Query: 259 HVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQR 318
VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ
Sbjct: 213 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANK-TDKASMLDEIIDYVKFLQL 271
Query: 319 QVEFLSM 325
QV+ LSM
Sbjct: 272 QVKVLSM 278
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 260 VRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 319
RARRGQAT+ HS+AER+RREKISERMK LQ LVP +K KA MLDEII+YV+ LQ Q
Sbjct: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKAD-KASMLDEIIDYVKFLQLQ 374
Query: 320 VEFLSM 325
V+ LSM
Sbjct: 375 VKVLSM 380
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 260 VRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 319
VRARRGQAT+ HS+AER+RRE+I+ERM+ LQ+LVP +K T +A MLDEI++YV+ L+ Q
Sbjct: 133 VRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNK-TDRAAMLDEILDYVKFLRLQ 191
Query: 320 VEFLSM 325
V+ LSM
Sbjct: 192 VKVLSM 197
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 54/64 (84%), Gaps = 2/64 (3%)
Query: 260 VRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKV--TGKAVMLDEIINYVQSLQ 317
VRARRGQAT+ HS+AER+RRE+I+ERMK LQ+LVP +K+ T KA MLDEII+YV+ LQ
Sbjct: 250 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQ 309
Query: 318 RQVE 321
QV+
Sbjct: 310 LQVK 313
>Os06g0613500 Similar to Helix-loop-helix protein homolog
Length = 154
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 48/51 (94%)
Query: 286 MKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDF 336
M+ L++LVPGCSKV+G A++LDEIIN+VQSLQRQVE+LSM+LA+VNP +DF
Sbjct: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDF 51
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 260 VRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 319
+RA+RG AT+ S+AERVRR +ISER++ LQ+LVP K T A MLD ++Y++ LQ+Q
Sbjct: 319 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQKQ 378
Query: 320 VEFL 323
V+ L
Sbjct: 379 VKVL 382
>Os08g0506700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 399
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 260 VRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 319
+RA+RG AT+ S+AERVRR +ISER++ LQ+LVP K T A MLD ++Y++ LQ+Q
Sbjct: 318 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQ 377
Query: 320 VEFL 323
V+ L
Sbjct: 378 VKGL 381
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 262 ARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 321
A+R +A H+L+ER RR++I+E+MK LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 265 AKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 323
Query: 322 FLSMKLASVNPTLDF 336
+ M P + F
Sbjct: 324 MMWMGGGMAPPAVMF 338
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 263 RRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 322
+R + H+L+ER RR++I+E+M+ LQ+L+P C+K+ KA MLDE I Y+++LQ QV+
Sbjct: 381 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKID-KASMLDEAIEYLKTLQLQVQM 439
Query: 323 LSM 325
+SM
Sbjct: 440 MSM 442
>Os12g0589000
Length = 304
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 85/176 (48%), Gaps = 16/176 (9%)
Query: 179 NGGAGHDEGTRVSCSKKRKRS------GQDGGVKHAEGGEQLATVGSAQKNEDDEKGEPK 232
NG GH++ VS + KRK+S GQ G K A E + Q E D
Sbjct: 129 NGELGHEDLDSVSGTNKRKQSAEGEFDGQTRGSKCARKAEPKRAKKAKQTVEKDASVAIP 188
Query: 233 RSSVASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDL 292
S + + ++ A + RA RG AT+ SL R RRE+I+ER+K LQ+L
Sbjct: 189 NGSCSISDNDSSSSQEVADAGATSKGKSRAGRGAATDPQSLYARKRRERINERLKTLQNL 248
Query: 293 VPGCSKVTGKAVMLDEIINYVQSLQRQVEFLS---------MKLASVNPTLDFNIE 339
VP +KV + ML+E ++YV+ LQ Q++ LS + +N LD NI+
Sbjct: 249 VPNGTKVD-ISTMLEEAVHYVKFLQLQIKLLSSDEMWMYAPIAYNGMNIGLDLNID 303
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 263 RRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 322
RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA +LDE I Y++SLQ QV+
Sbjct: 217 RRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASILDEAIEYLKSLQMQVQI 275
Query: 323 LSM 325
+ M
Sbjct: 276 MWM 278
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 11/130 (8%)
Query: 262 ARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVE 321
++R +A H+L+E+ RR KI+E+MK LQ L+P +K T KA MLDE I Y++ LQ QV+
Sbjct: 22 SKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNK-TDKASMLDEAIEYLKQLQLQVQ 80
Query: 322 FLSMKL-ASVNPT-LDFNIERILSKDIFQCRGTTASSAFGFFPDIVHP-RLHPPKYTQVG 378
LSM+ +NP+ L +E + +F G G +VHP + PP G
Sbjct: 81 MLSMRNGVYLNPSYLSGALEPAQASQMFAALG-------GNNVTVVHPGTVMPPVNQSSG 133
Query: 379 MPSIVNPTDA 388
+ +P ++
Sbjct: 134 AHHLFDPLNS 143
>Os01g0900800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 387
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 219 SAQKNEDDEKGEPKRSSV-ASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERV 277
S+ N D + G K+SS+ +G Q++ P RA+RG AT+ S+AER
Sbjct: 272 SSFSNIDSQFGLSKQSSLEMAGMDDFLQLQ-----PDSVACRARAKRGCATHPRSIAERE 326
Query: 278 RREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFL 323
RR +IS+R+K LQDLVP K T + MLD + Y++ LQ QVE L
Sbjct: 327 RRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQGQVEKL 372
>Os02g0795800
Length = 463
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 48/80 (60%), Gaps = 23/80 (28%)
Query: 268 TNSHSLAERV----------------------RREKISERMKYLQDLVPGCSKVTGKAVM 305
T+ HS+AERV RRE+I+ERMK LQ+LVP +K T KA M
Sbjct: 220 TDPHSIAERVYHSPTTFPFSPPFFIASMPCCLRRERIAERMKALQELVPNANK-TDKASM 278
Query: 306 LDEIINYVQSLQRQVEFLSM 325
LDEII+YV+ LQ QV+ LSM
Sbjct: 279 LDEIIDYVKFLQLQVKVLSM 298
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,217,762
Number of extensions: 854309
Number of successful extensions: 2664
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 2664
Number of HSP's successfully gapped: 27
Length of query: 437
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 333
Effective length of database: 11,605,545
Effective search space: 3864646485
Effective search space used: 3864646485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)