Os08g0524800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TA1 protein (Fragment).
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Os08g0524800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TA1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.29 | 0.617 | 9.67 | -3.63 | 0.526 | 2.07 | -2.7 | -3.63 | -0.497 | 19.3 | 24.11 | 1113 | -- | -- |
| 177.23 | 0.62 | 9.59 | -2.78 | 0.459 | 1.81 | -2.83 | -- | -0.351 | 19.6 | 23.05 | 1017 | -- | -- |
| 189.88 | 0.642 | 9.7 | -3.74 | 0.561 | 2.05 | -- | -4.42 | -0.528 | 20.5 | 24.3 | 1130 | -- | -- |
| 197.44 | 0.654 | 9.57 | -2.66 | 0.644 | 1.58 | -- | -- | -0.251 | 20.7 | 23.97 | 1184 | -- | -- |
| 195.11 | 0.651 | 9.69 | -3.7 | -- | 2.35 | -- | -4.49 | -0.592 | -- | 23.44 | 912 | -- | -- |
| 268 | 0.767 | 9.52 | -2.23 | 0.827 | -- | -1.92 | -- | -0.0163 | 21 | -- | -- | -- | -- |
| 277.89 | 0.781 | 9.52 | -2.17 | 0.841 | -- | -- | -- | -0.021 | 22 | -- | -- | -- | -- |
| 207.76 | 0.671 | 9.57 | -2.71 | -- | 1.96 | -- | -- | -0.34 | -- | 22.94 | 920 | -- | -- |
| 370.43 | 0.896 | 9.47 | -- | 0.636 | 1.08 | -- | -- | 0.208 | 20.6 | 25.47 | 1092 | -- | -- |
| 320.51 | 0.837 | 9.5 | -2.16 | -- | -- | -- | -- | -0.0205 | -- | -- | -- | -- | -- |
| 402.48 | 0.938 | 9.47 | -- | 0.834 | -- | -- | -- | 0.221 | 21.8 | -- | -- | -- | -- |
| 386.59 | 0.916 | 9.46 | -- | -- | 1.37 | -- | -- | 0.123 | -- | 24.6 | 909 | -- | -- |
| 444.02 | 0.984 | 9.44 | -- | -- | -- | -- | -- | 0.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.90 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 6 | 174.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 8 | 174.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 9 | 174.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 10 | 175.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 18 |
| 18 | 175.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 25 | 175.90 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 37 | 176.30 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 47 | 176.58 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 50 | 176.60 | temperature | 20 | 720 | > th | dose dependent | sin | 19 | NA |
| 156 | 179.56 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 235 | 182.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 21 |
| 263 | 182.77 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 275 | 182.87 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 279 | 182.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 330 | 183.44 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 521 | 184.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 561 | 184.46 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 621 | 184.66 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 707 | 184.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 737 | 184.97 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 23 |
| 747 | 185.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 17 |
| 762 | 185.04 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 776 | 185.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 781 | 185.08 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 814 | 185.15 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 17 |
| 842 | 185.20 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 865 | 185.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 932 | 185.38 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 989 | 185.49 | wind | 5 | 43200 | > th | dose dependent | sin | 3 | NA |