BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0524800 Os08g0524800|AK099291
(405 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0524800 Similar to TA1 protein (Fragment) 581 e-166
Os09g0501600 Similar to MYC1 308 3e-84
Os01g0915600 Similar to TA1 protein (Fragment) 265 5e-71
Os06g0275600 Similar to TA1 protein (Fragment) 171 1e-42
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 167 2e-41
Os09g0474100 Similar to TA1 protein (Fragment) 162 6e-40
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 150 2e-36
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 149 5e-36
Os08g0536800 Similar to TA1 protein (Fragment) 148 6e-36
Os05g0103000 Similar to MYC1 148 6e-36
Os03g0802900 Similar to MYC1 146 3e-35
Os08g0487700 Similar to TA1 protein (Fragment) 142 6e-34
Os09g0510500 Similar to Phytochrome-interacting factor 4 (B... 142 6e-34
Os06g0184000 95 7e-20
Os03g0797600 Similar to Helix-loop-helix protein homolog 94 2e-19
Os06g0193400 Similar to Helix-loop-helix protein homolog 92 7e-19
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 91 1e-18
Os06g0613500 Similar to Helix-loop-helix protein homolog 82 8e-16
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 76 4e-14
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 73 5e-13
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 72 8e-13
Os07g0143200 Basic helix-loop-helix dimerisation region bHL... 72 1e-12
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 71 1e-12
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 71 2e-12
Os08g0506700 Basic helix-loop-helix dimerisation region bHL... 70 3e-12
Os02g0795800 67 2e-11
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 67 2e-11
>Os08g0524800 Similar to TA1 protein (Fragment)
Length = 405
Score = 581 bits (1497), Expect = e-166, Method: Compositional matrix adjust.
Identities = 309/405 (76%), Positives = 309/405 (76%)
Query: 1 MDGGRVGGDYISSLLSSSPRLDFGVPVLDAIVAXXXXXXXXXXXXXXXXXXXXFAERAAR 60
MDGGRVGGDYISSLLSSSPRLDFGVPVLDAIVA FAERAAR
Sbjct: 1 MDGGRVGGDYISSLLSSSPRLDFGVPVLDAIVAPGGGGGGGDCGLDKLCGDPGFAERAAR 60
Query: 61 LSSFNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSREASSVXXXXXXXXXXXXXXXX 120
LSSFNN SREASSV
Sbjct: 61 LSSFNNGGGGVGQRYGGAGAGLFGMPPPAPGDFAGGGSREASSVSDPASSAMKDAAANAK 120
Query: 121 XXXXXXXXXXXXXXXXXEPPVGEEKESDGKRCKTGNGEKESSVKPKAEQAGSDSSVEDXX 180
EPPVGEEKESDGKRCKTGNGEKESSVKPKAEQAGSDSSVED
Sbjct: 121 KRKSTAAAAAAAKGKGKEPPVGEEKESDGKRCKTGNGEKESSVKPKAEQAGSDSSVEDGG 180
Query: 181 XXXXXXXXXXNAKPVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGC 240
NAKPVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGC
Sbjct: 181 GGGQKQGKGKNAKPVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGC 240
Query: 241 NKVIGKALMLDEIINYVQSLQRQVEFLSMKLATVNPLDFSNLPTLLQKDMFQACGPSASS 300
NKVIGKALMLDEIINYVQSLQRQVEFLSMKLATVNPLDFSNLPTLLQKDMFQACGPSASS
Sbjct: 241 NKVIGKALMLDEIINYVQSLQRQVEFLSMKLATVNPLDFSNLPTLLQKDMFQACGPSASS 300
Query: 301 VFSLESSNSAFRFAEQGDVFQQFAQNSMESQCTLNQLDLALSQATNAAQYAFQDGTAGAN 360
VFSLESSNSAFRFAEQGDVFQQFAQNSMESQCTLNQLDLALSQATNAAQYAFQDGTAGAN
Sbjct: 301 VFSLESSNSAFRFAEQGDVFQQFAQNSMESQCTLNQLDLALSQATNAAQYAFQDGTAGAN 360
Query: 361 LQQRNFWEDDLQSVFHIENGQSQENGVSAPNFHGQQQAGHMKMEF 405
LQQRNFWEDDLQSVFHIENGQSQENGVSAPNFHGQQQAGHMKMEF
Sbjct: 361 LQQRNFWEDDLQSVFHIENGQSQENGVSAPNFHGQQQAGHMKMEF 405
>Os09g0501600 Similar to MYC1
Length = 366
Score = 308 bits (790), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 167/268 (62%), Positives = 192/268 (71%), Gaps = 23/268 (8%)
Query: 141 VGEEKESDGKRCKTGNGEKESSVKPKAEQAGSDSSVEDXXXXXXXXXXXXNAKPV-EPPK 199
VGE K D K+CK + V PK E+A SD SV D ++KP EPPK
Sbjct: 119 VGEAKAPDSKKCK-------AEVNPKVEEAASDGSVGDRVQKQGKGKN--SSKPAAEPPK 169
Query: 200 DYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQS 259
DYVHVRARRGQATDSHSLAERVRRE+ISQRMKVLQDLVPGCNKV+GKALMLDEIINYVQS
Sbjct: 170 DYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQS 229
Query: 260 LQRQVEFLSMKLATVNP-LDFSNLPTLLQKDMFQACGPSASSVFSLESSNSAFRFAEQGD 318
LQ+QVEFLSMKLATVNP LDF NL TLLQKDMFQ+CGPS +SVF LES+ +AF F +Q D
Sbjct: 230 LQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQSCGPSVNSVFPLESAGTAFPFCDQAD 289
Query: 319 VFQQFAQNSMESQCTLNQLDLALSQATNAAQYAFQDGTAGANLQQRNFWEDDLQSVFHIE 378
FQ F +ME+QC+L+ + AL T + QYAFQ QQR+ WED+ F
Sbjct: 290 FFQSFGLGAMENQCSLDLANTALPH-TGSTQYAFQK-------QQRDLWEDN---TFQYN 338
Query: 379 NGQSQENGVSAPNFHGQQQAG-HMKMEF 405
+ QSQE+ VSAPNF GQ QA H ++EF
Sbjct: 339 DEQSQEDAVSAPNFDGQLQAADHTEIEF 366
>Os01g0915600 Similar to TA1 protein (Fragment)
Length = 481
Score = 265 bits (677), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 184/270 (68%), Gaps = 15/270 (5%)
Query: 144 EKESDGKRCKTGN----GEKESSVKPKAEQAGSDSSVEDXXXXXXXXXXXXNAKPVEPPK 199
+++S GKRCK+ +E+S K KA Q+ S++ ++KP EPPK
Sbjct: 219 KEDSSGKRCKSTEESNAAAEENSGKGKAAQSNSENG------GGKKQGKDSSSKPPEPPK 272
Query: 200 DYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQS 259
DY+HVRARRG+ATDSHSLAERVRRE+ISQRMK+LQDLVPGCNKV+GKA+MLDEIINYVQS
Sbjct: 273 DYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQS 332
Query: 260 LQRQVEFLSMKLATVNP-LDFSNLPTLLQKDMFQACGPSASSVFSLESSNSAFRF---AE 315
LQRQVEFLSMKLATVNP LDF+NLP LL KDM Q+C P SS F LE+S + + +
Sbjct: 333 LQRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHFPLETSGAPLPYINQPQ 392
Query: 316 QGDVFQQFAQNSMESQCTLNQLDLALSQATNAAQYAFQDGTAGANLQQRNFWEDDLQSVF 375
QG+ N M++Q +++ LD A + + + F +G + A Q FW+DDLQSV
Sbjct: 393 QGNPLGCGLTNGMDNQGSMHPLDPAFCRPM-GSHHPFLNGVSDAASQVGAFWQDDLQSVV 451
Query: 376 HIENGQSQENGVSAPNFHGQQQAGHMKMEF 405
++ GQSQE S+ +++G Q HMKME
Sbjct: 452 QMDMGQSQEIATSSNSYNGSLQTVHMKMEL 481
>Os06g0275600 Similar to TA1 protein (Fragment)
Length = 437
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/109 (76%), Positives = 95/109 (87%), Gaps = 2/109 (1%)
Query: 197 PPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINY 256
P +DY+HVRARRGQAT+SHSLAERVRRE+IS+RMK LQDLVPGC+KV GKA+MLDEIINY
Sbjct: 253 PKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINY 312
Query: 257 VQSLQRQVEFLSMKLATVNP-LDFSNLPTLLQKDMFQACGPSASSVFSL 304
VQSLQRQVEFLSMKLA+VNP LDF N+ +L KD+FQ G +ASS F
Sbjct: 313 VQSLQRQVEFLSMKLASVNPTLDF-NIERILSKDIFQCRGTTASSAFGF 360
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 99/125 (79%), Gaps = 14/125 (11%)
Query: 193 KPVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDE 252
KP EP KDY+HVRARRGQATDSHSLAERVRRERIS+RMK+LQ LVPGCNK+ GKALMLDE
Sbjct: 71 KP-EPAKDYIHVRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDE 129
Query: 253 IINYVQSLQRQVEFLSMKLATVNP-LDFSN--LPTLLQKDM-------FQACGPSASSVF 302
IINYVQSLQRQVEFLSMKLAT+NP LDF + +P+ KDM + + P+ ++ F
Sbjct: 130 IINYVQSLQRQVEFLSMKLATMNPQLDFDSHYMPS---KDMSHMPVPAYPSSDPTTTTAF 186
Query: 303 SLESS 307
S S
Sbjct: 187 SYTGS 191
>Os09g0474100 Similar to TA1 protein (Fragment)
Length = 428
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 106/141 (75%), Gaps = 15/141 (10%)
Query: 199 KDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQ 258
++Y+HVRARRGQAT+SHSLAER+RRE+IS+RMK+LQDLVPGC+KV GKA+MLDEIINYVQ
Sbjct: 243 EEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQ 302
Query: 259 SLQRQVEFLSMKLATVNP-LDFSNLPTLLQKDMFQACG-PSASSVFSLESSNSAFRFAEQ 316
SLQRQVEFLSMKLATVNP LD N+ LL KD+ + G PS+S FS E + + ++
Sbjct: 303 SLQRQVEFLSMKLATVNPRLDL-NIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQP 361
Query: 317 G------------DVFQQFAQ 325
G DVF++ Q
Sbjct: 362 GLIHGGTAGMANPDVFRRIIQ 382
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/107 (69%), Positives = 88/107 (82%), Gaps = 2/107 (1%)
Query: 200 DYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQS 259
DY+HVRARRGQATDSHSLAERVRRERIS+RM+ LQ+LVPGCNKV GKA MLDEIINYVQS
Sbjct: 160 DYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQS 219
Query: 260 LQRQVEFLSMKLATVNP-LDFSNLPTLLQKDMFQ-ACGPSASSVFSL 304
LQ+QVEFLSMK+A NP ++F+ + L + + Q AC P+A +L
Sbjct: 220 LQKQVEFLSMKIAASNPVVNFNIVEDLFGRQLSQAACNPAALPAMAL 266
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 83/93 (89%)
Query: 199 KDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQ 258
+DYVHVRA+RGQAT+SHSLAER+RR++IS+RMK+LQDLVPGC+K+ GKA+MLDEIINYVQ
Sbjct: 142 EDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQ 201
Query: 259 SLQRQVEFLSMKLATVNPLDFSNLPTLLQKDMF 291
SLQRQVEFLSMKLATVNP ++ +L K M
Sbjct: 202 SLQRQVEFLSMKLATVNPELSFDIEQILSKQMM 234
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 79/84 (94%)
Query: 196 EPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIIN 255
EPPK Y+HVRARRGQATDSHSLAERVRRERIS+RM++LQ LVPGC+KV GKAL+LDEIIN
Sbjct: 133 EPPKGYIHVRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIIN 192
Query: 256 YVQSLQRQVEFLSMKLATVNPLDF 279
YVQSLQ QVEFLSM++A+++P+ +
Sbjct: 193 YVQSLQNQVEFLSMRIASMSPVLY 216
>Os05g0103000 Similar to MYC1
Length = 339
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 94/135 (69%), Gaps = 13/135 (9%)
Query: 196 EPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIIN 255
EPP Y+HVRARRGQATDSHSLAERVRRE+IS+RMK+LQ LVPGC+KV GKALMLDEII+
Sbjct: 172 EPPAGYIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIIS 231
Query: 256 YVQSLQRQVEFLSMKLATVNPLDFSNLPTL------------LQKDMFQACGPSASSVFS 303
YVQSLQ QVEFLSMKLA+++PL + P + + +M Q G S+ S
Sbjct: 232 YVQSLQNQVEFLSMKLASLSPLMYEFGPGIDMHPDVLRQLAKMPHEMVQCMGQMGSTGIS 291
Query: 304 LES-SNSAFRFAEQG 317
L+ FA+ G
Sbjct: 292 LQGLGGGPTGFAQDG 306
>Os03g0802900 Similar to MYC1
Length = 265
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 65/77 (84%), Positives = 73/77 (94%)
Query: 199 KDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQ 258
+DY+HVRARRGQATDSHSLAER RRE+IS+RMK+LQDLVPGCNKVIGKA +LDEIINY+Q
Sbjct: 131 QDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQ 190
Query: 259 SLQRQVEFLSMKLATVN 275
+LQRQVEFLSMKL VN
Sbjct: 191 ALQRQVEFLSMKLEAVN 207
>Os08g0487700 Similar to TA1 protein (Fragment)
Length = 365
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 77/85 (90%), Gaps = 3/85 (3%)
Query: 201 YVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSL 260
Y HVRAR+GQAT++HSLAER+RRE+IS+RMK+LQDLVPGC+KV GKALMLDEIINYVQSL
Sbjct: 173 YSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSL 232
Query: 261 QRQVEFLSMKLATVNP---LDFSNL 282
QRQVEFLSMKL+ VNP LD +L
Sbjct: 233 QRQVEFLSMKLSAVNPRIDLDIESL 257
>Os09g0510500 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 282
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 78/84 (92%)
Query: 196 EPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIIN 255
E P+ ++HVRARRGQATDSHSLAERVRRERIS+RM++LQ LVPGC+KV GKAL+LDEIIN
Sbjct: 99 EAPQGFIHVRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIIN 158
Query: 256 YVQSLQRQVEFLSMKLATVNPLDF 279
YVQSLQ QVEFLSM++A+++P+ +
Sbjct: 159 YVQSLQNQVEFLSMRIASLSPVLY 182
>Os06g0184000
Length = 430
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 197 PPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINY 256
PP+ VRARRGQATD HS+AER+RRERI++RMK LQ+LVP NK KA MLDEII+Y
Sbjct: 208 PPRQQ-RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANKT-DKASMLDEIIDY 265
Query: 257 VQSLQRQVEFLSM 269
V+ LQ QV+ LSM
Sbjct: 266 VKFLQLQVKVLSM 278
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 196 EPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIIN 255
+PP VRARRGQATD HS+AER+RRERI++RM+ LQ+LVP NK +A MLDEI++
Sbjct: 125 QPPAPRPKVRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKT-DRAAMLDEILD 183
Query: 256 YVQSLQRQVEFLSM 269
YV+ L+ QV+ LSM
Sbjct: 184 YVKFLRLQVKVLSM 197
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 57/79 (72%), Gaps = 9/79 (11%)
Query: 191 NAKPVEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALML 250
NAKP RARRGQATD HS+AER+RRE+IS+RMK LQ LVP NK KA ML
Sbjct: 311 NAKP--------RTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKA-DKASML 361
Query: 251 DEIINYVQSLQRQVEFLSM 269
DEII+YV+ LQ QV+ LSM
Sbjct: 362 DEIIDYVKFLQLQVKVLSM 380
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Query: 204 VRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVI--GKALMLDEIINYVQSLQ 261
VRARRGQATD HS+AER+RRERI++RMK LQ+LVP NK++ KA MLDEII+YV+ LQ
Sbjct: 250 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQ 309
Query: 262 RQVEFLSMKLATVNPLDFSNL 282
QV+ + ++ L S L
Sbjct: 310 LQVKASTYTKLLIHVLSMSRL 330
>Os06g0613500 Similar to Helix-loop-helix protein homolog
Length = 154
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 230 MKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEFLSMKLATVNP-LDFSNLPTLLQK 288
M++L++LVPGC+KV G AL+LDEIIN+VQSLQRQVE+LSM+LA VNP +DF L L
Sbjct: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
Query: 289 DMFQACGPSASSVFSLE 305
+ + G + + LE
Sbjct: 61 ECGRITGLNYKNGMDLE 77
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Query: 207 RRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEF 266
+R + + H+L+ER RR+RI+++M+ LQ+L+P CNK I KA MLDE I Y+++LQ QV+
Sbjct: 381 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNK-IDKASMLDEAIEYLKTLQLQVQM 439
Query: 267 LSMKLATVNPLDFSNLPTLLQ 287
+SM P LPT +Q
Sbjct: 440 MSMGTGLCIPPML--LPTAMQ 458
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 7/96 (7%)
Query: 207 RRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEF 266
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA +LDE I Y++SLQ QV+
Sbjct: 217 RRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASILDEAIEYLKSLQMQVQI 275
Query: 267 LSMKLATVNPLDFSN----LPTLLQKDMFQACGPSA 298
+ M + P+ F +P + M AC P+A
Sbjct: 276 MWMTTG-MAPMMFPGAHQFMPPMA-VGMNSACMPAA 309
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 53/73 (72%), Gaps = 6/73 (8%)
Query: 202 VHVRA-----RRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINY 256
VH R+ +R + + H+L+ER RR+RI+++M+ LQ+L+P CNK I KA ML+E I Y
Sbjct: 322 VHRRSAARSSKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNK-IDKASMLEEAIEY 380
Query: 257 VQSLQRQVEFLSM 269
+++LQ QV+ +SM
Sbjct: 381 LKTLQLQVQMMSM 393
>Os07g0143200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 447
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 5/95 (5%)
Query: 207 RRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEF 266
RR +A + H+L+ER RR+RI+++++ LQ+LVP CNK KA +LDE I Y++SLQ QV+
Sbjct: 226 RRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKT-DKASILDEAIEYLKSLQMQVQI 284
Query: 267 LSMKLATVNPLDFSNLPTLLQK---DMFQACGPSA 298
+ M V P+ F L+ + AC P A
Sbjct: 285 MWMTTGIV-PMMFPGTHQLMPPMGMGLNTACMPGA 318
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 206 ARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVE 265
A+R +A + H+L+ER RR+RI+++MK LQ+L+P CNK KA MLDE I Y++SLQ Q++
Sbjct: 265 AKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNKT-DKASMLDEAIEYLKSLQLQLQ 323
Query: 266 FLSM 269
+ M
Sbjct: 324 MMWM 327
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 204 VRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQ 263
+RA+RG AT S+AERVRR RIS+R++ LQ+LVP K A MLD ++Y++ LQ+Q
Sbjct: 319 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQKQ 378
Query: 264 VEFL 267
V+ L
Sbjct: 379 VKVL 382
>Os08g0506700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 399
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 47/64 (73%)
Query: 204 VRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQ 263
+RA+RG AT S+AERVRR RIS+R++ LQ+LVP +K A MLD ++Y++ LQ+Q
Sbjct: 318 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQ 377
Query: 264 VEFL 267
V+ L
Sbjct: 378 VKGL 381
>Os02g0795800
Length = 463
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 47/80 (58%), Gaps = 23/80 (28%)
Query: 212 TDSHSLAERV----------------------RRERISQRMKVLQDLVPGCNKVIGKALM 249
TD HS+AERV RRERI++RMK LQ+LVP NK KA M
Sbjct: 220 TDPHSIAERVYHSPTTFPFSPPFFIASMPCCLRRERIAERMKALQELVPNANKT-DKASM 278
Query: 250 LDEIINYVQSLQRQVEFLSM 269
LDEII+YV+ LQ QV+ LSM
Sbjct: 279 LDEIIDYVKFLQLQVKVLSM 298
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 206 ARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVE 265
++R +A + H+L+E+ RR +I+++MK LQ L+P NK KA MLDE I Y++ LQ QV+
Sbjct: 22 SKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNKT-DKASMLDEAIEYLKQLQLQVQ 80
Query: 266 FLSMKLAT-VNPLDFSN-LPTLLQKDMFQACG 295
LSM+ +NP S L MF A G
Sbjct: 81 MLSMRNGVYLNPSYLSGALEPAQASQMFAALG 112
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,927,395
Number of extensions: 328370
Number of successful extensions: 901
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 27
Length of query: 405
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 302
Effective length of database: 11,657,759
Effective search space: 3520643218
Effective search space used: 3520643218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)