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Os06g0613500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Helix-loop-helix protein homolog.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.91 (0.0237) R2 : 0.625
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.6 (0.0619) R2dC : 0.556 R2C : 0.543
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.438 (0.0499) R2dN8 : 0.0821 R2N8 : 0.0686
σ : 0.447
deviance : 91.24
__
_____
C
peak time of C : 18.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.58 0.392 8.96 0.173 1.58 -0.505 -1.18 -3.89 -0.495 18.5 10 4177 -- --
81.68 0.421 8.95 0.0182 1.58 -0.401 -0.959 -- -0.511 18.5 8.117 29255 -- --
72.32 0.396 8.96 0.168 1.58 -0.455 -- -3.59 -0.499 18.5 10.01 4249 -- --
76.37 0.407 8.91 -0.248 1.44 -0.629 -- -- -0.711 18.4 4.493 28445 -- --
123.19 0.517 8.73 0.0644 -- -2.28 -- -3.86 -0.475 -- 1.664 5143 -- --
88.9 0.442 8.91 -0.186 1.61 -- -0.792 -- -0.455 18.7 -- -- -- --
90.44 0.445 8.92 -0.174 1.6 -- -- -- -0.458 18.7 -- -- -- --
89.93 0.442 8.9 -0.323 -- -2.15 -- -- -0.553 -- 3.35 816 -- --
78.37 0.412 8.96 -- 1.44 -0.775 -- -- -0.671 18.8 5.662 29499 -- --
224.55 0.7 8.88 -0.211 -- -- -- -- -0.489 -- -- -- -- --
91.24 0.447 8.91 -- 1.6 -- -- -- -0.438 18.7 -- -- -- --
92.44 0.448 8.89 -- -- -2.13 -- -- -0.523 -- 3.87 812 -- --
225.73 0.701 8.88 -- -- -- -- -- -0.466 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.64 wind 1 14400 < th dose dependent rect. 10 4
3 69.02 radiation 10 4320 < th dose dependent rect. 15 16
4 69.14 humidity 80 43200 > th dose dependent rect. 21 1
5 69.19 humidity 90 14400 < th dose dependent rect. 20 9
6 69.21 humidity 90 14400 < th dose dependent rect. 20 11
8 69.24 temperature 30 720 < th dose dependent rect. 6 11
9 69.26 temperature 30 720 < th dose dependent rect. 5 13
13 69.30 humidity 90 14400 < th dose dependent rect. 21 6
24 69.45 humidity 50 14400 > th dose dependent rect. 1 1
31 69.51 radiation 10 4320 < th dose dependent sin 13 NA
45 69.63 humidity 80 43200 > th dose dependent rect. 17 19
47 69.65 radiation 10 14400 < th dose independent rect. 6 1
59 69.70 humidity 80 43200 > th dose dependent rect. 17 9
63 69.71 radiation 1 4320 > th dose dependent rect. 15 16
64 69.72 temperature 25 270 < th dose independent rect. 6 16
77 69.76 radiation 10 4320 < th dose dependent rect. 17 1
93 69.79 temperature 25 43200 > th dose independent rect. 20 1
95 69.79 radiation 1 4320 > th dose dependent rect. 16 14
116 69.84 temperature 25 720 < th dose independent rect. 3 16
123 69.85 humidity 90 43200 > th dose dependent rect. 6 1
124 69.85 radiation 40 4320 < th dose dependent rect. 16 3
142 69.87 humidity 80 43200 > th dose dependent rect. 3 9
146 69.87 humidity 80 43200 > th dose dependent rect. 1 22
147 69.88 humidity 80 43200 > th dose dependent sin 15 NA
149 69.88 radiation 40 4320 < th dose dependent rect. 16 8
152 69.89 temperature 30 720 < th dose dependent sin 1 NA
166 69.90 temperature 25 43200 < th dose independent rect. 20 1
174 69.90 radiation 10 4320 < th dose dependent rect. 17 9
188 69.91 humidity 80 43200 > th dose dependent rect. 3 23
191 69.92 humidity 80 43200 > th dose dependent no NA NA
193 69.92 temperature 10 43200 > th dose dependent rect. 19 1
194 69.92 radiation 10 4320 < th dose dependent rect. 17 11
197 69.92 humidity 80 43200 > th dose dependent rect. 6 23
199 69.93 temperature 30 43200 < th dose dependent rect. 19 1
234 69.96 radiation 30 4320 < th dose dependent rect. 16 12
253 69.97 humidity 80 43200 > th dose dependent rect. 20 23
256 69.98 radiation 1 4320 > th dose dependent rect. 16 3
276 69.99 temperature 10 43200 > th dose dependent rect. 21 1
277 69.99 temperature 30 43200 < th dose dependent rect. 21 1
281 69.99 humidity 70 14400 > th dose dependent rect. 21 10
298 70.00 humidity 50 14400 > th dose dependent rect. 21 10
306 70.01 temperature 25 720 < th dose independent sin 2 NA
317 70.01 temperature 20 270 > th dose dependent rect. 5 21
319 70.02 radiation 1 43200 < th dose independent rect. 17 1
339 70.03 radiation 1 43200 > th dose independent rect. 17 1
373 70.06 temperature 25 270 < th dose independent rect. 3 20
409 70.09 humidity 90 43200 > th dose dependent rect. 6 6
419 70.10 humidity 90 43200 > th dose independent rect. 6 2
420 70.10 radiation 10 4320 < th dose independent rect. 15 16
441 70.12 humidity 90 43200 < th dose independent rect. 4 7
457 70.13 humidity 90 43200 < th dose independent rect. 1 11
458 70.13 radiation 10 14400 > th dose independent rect. 17 14
460 70.13 humidity 80 43200 > th dose dependent sin 4 NA
469 70.13 temperature 20 270 > th dose dependent rect. 7 18
481 70.15 humidity 90 43200 > th dose independent rect. 1 1
482 70.15 humidity 90 43200 < th dose independent rect. 4 5
611 70.25 radiation 10 4320 < th dose independent rect. 15 4
613 70.25 humidity 90 43200 > th dose independent rect. 6 6
614 70.25 radiation 10 4320 < th dose independent rect. 15 9
616 70.25 temperature 25 720 > th dose independent rect. 5 14
625 70.26 humidity 90 43200 < th dose independent rect. 1 1
639 70.27 humidity 90 43200 < th dose independent sin 4 NA
648 70.27 humidity 90 43200 < th dose independent rect. 1 17
673 70.29 wind 3 14400 < th dose independent rect. 11 3
724 70.32 humidity 90 43200 > th dose independent rect. 1 11
742 70.33 temperature 10 43200 > th dose dependent rect. 6 1
754 70.34 wind 1 43200 > th dose independent rect. 20 3
755 70.34 humidity 90 43200 < th dose independent rect. 21 15
776 70.35 temperature 30 43200 < th dose dependent rect. 6 1
805 70.37 radiation 10 14400 > th dose independent rect. 6 1
810 70.37 radiation 1 4320 < th dose independent rect. 17 13
826 70.38 wind 1 14400 > th dose independent rect. 11 3
827 70.38 humidity 90 43200 < th dose independent rect. 6 3
831 70.38 humidity 80 43200 < th dose independent rect. 11 12
848 70.39 humidity 80 43200 < th dose independent rect. 15 5
849 70.39 humidity 90 43200 > th dose independent rect. 1 8
853 70.39 humidity 80 43200 > th dose independent rect. 10 13
859 70.39 humidity 90 43200 < th dose independent rect. 3 16
860 70.39 humidity 90 43200 < th dose independent rect. 21 21
870 70.40 humidity 90 43200 < th dose independent rect. 6 5
879 70.40 humidity 90 43200 < th dose independent rect. 23 19
910 70.41 wind 3 43200 < th dose dependent rect. 21 3
919 70.41 temperature 10 43200 > th dose dependent rect. 17 14
920 70.41 temperature 30 43200 < th dose dependent rect. 17 14
946 70.42 wind 3 43200 < th dose dependent rect. 23 1
970 70.43 wind 1 14400 < th dose independent rect. 9 6