BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0613500 Os06g0613500|AK070970
(154 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0613500 Similar to Helix-loop-helix protein homolog 322 8e-89
Os01g0915600 Similar to TA1 protein (Fragment) 89 1e-18
Os08g0487700 Similar to TA1 protein (Fragment) 89 2e-18
Os09g0474100 Similar to TA1 protein (Fragment) 88 3e-18
Os09g0501600 Similar to MYC1 87 6e-18
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 84 3e-17
Os06g0275600 Similar to TA1 protein (Fragment) 84 3e-17
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 83 9e-17
Os08g0524800 Similar to TA1 protein (Fragment) 82 2e-16
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 77 3e-15
Os03g0802900 Similar to MYC1 76 1e-14
Os08g0536800 Similar to TA1 protein (Fragment) 75 1e-14
Os09g0510500 Similar to Phytochrome-interacting factor 4 (B... 75 1e-14
Os05g0103000 Similar to MYC1 71 4e-13
>Os06g0613500 Similar to Helix-loop-helix protein homolog
Length = 154
Score = 322 bits (824), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT
Sbjct: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
Query: 61 ECGRITGLNYKNGMDLEQVTWPDMGVHGARNLMQLQQQFWHGDLAHPLQPPSQWEKRTDT 120
ECGRITGLNYKNGMDLEQVTWPDMGVHGARNLMQLQQQFWHGDLAHPLQPPSQWEKRTDT
Sbjct: 61 ECGRITGLNYKNGMDLEQVTWPDMGVHGARNLMQLQQQFWHGDLAHPLQPPSQWEKRTDT 120
Query: 121 NPPVFSNSSSSLFGYDLASSGAPAQTGNKLKTEL 154
NPPVFSNSSSSLFGYDLASSGAPAQTGNKLKTEL
Sbjct: 121 NPPVFSNSSSSLFGYDLASSGAPAQTGNKLKTEL 154
>Os01g0915600 Similar to TA1 protein (Fragment)
Length = 481
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
M+LL++LVPGC+KV G A++LDEIIN+VQSLQRQVE+LSM+LA VNP++DF L N L
Sbjct: 303 MKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAK 362
Query: 61 E 61
+
Sbjct: 363 D 363
>Os08g0487700 Similar to TA1 protein (Fragment)
Length = 365
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 71/126 (56%), Gaps = 19/126 (15%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFG-------- 52
M+LL++LVPGCSKV+G AL+LDEIIN+VQSLQRQVE+LSM+L+AVNPR+D
Sbjct: 202 MKLLQDLVPGCSKVTGKALMLDEIINYVQSLQRQVEFLSMKLSAVNPRIDLDIESLVNNS 261
Query: 53 -GLDNFLTTECGRITGLNYKN----GMDLEQVTWPDMGVHGARN------LMQLQQQFWH 101
+ F G ++ G+ L + GVHG N LMQ QQQ
Sbjct: 262 KDVLRFPGQPSSAPMGFSFSTEMMPGLQLSRPGILQGGVHGMINPDVFTSLMQKQQQNDK 321
Query: 102 GDLAHP 107
G P
Sbjct: 322 GAFREP 327
>Os09g0474100 Similar to TA1 protein (Fragment)
Length = 428
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
M+LL++LVPGCSKV+G A++LDEIIN+VQSLQRQVE+LSM+LA VNPR+D ++ L+
Sbjct: 274 MKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDL-NIEGLLSK 332
Query: 61 ECGRITGL 68
+ R G+
Sbjct: 333 DLLRFPGV 340
>Os09g0501600 Similar to MYC1
Length = 366
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 54/67 (80%), Gaps = 4/67 (5%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
M++L++LVPGC+KV G AL+LDEIIN+VQSLQ+QVE+LSM+LA VNP++DFG L L
Sbjct: 200 MKVLQDLVPGCNKVVGKALMLDEIINYVQSLQQQVEFLSMKLATVNPQLDFGNLSTLLQK 259
Query: 61 E----CG 63
+ CG
Sbjct: 260 DMFQSCG 266
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 48/51 (94%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDF 51
M+LL+ LVPGC+K++G AL+LDEIIN+VQSLQRQVE+LSM+LA +NP++DF
Sbjct: 107 MKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQVEFLSMKLATMNPQLDF 157
>Os06g0275600 Similar to TA1 protein (Fragment)
Length = 437
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 48/51 (94%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDF 51
M+ L++LVPGCSKV+G A++LDEIIN+VQSLQRQVE+LSM+LA+VNP +DF
Sbjct: 286 MKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDF 336
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 47/51 (92%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDF 51
M+LL++LVPGCSK++G A++LDEIIN+VQSLQRQVE+LSM+LA VNP + F
Sbjct: 173 MKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPELSF 223
>Os08g0524800 Similar to TA1 protein (Fragment)
Length = 405
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
M++L++LVPGC+KV G AL+LDEIIN+VQSLQRQVE+LSM+LA VNP +DF L L
Sbjct: 230 MKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEFLSMKLATVNP-LDFSNLPTLLQK 288
Query: 61 ECGRITGLNYKNGMDLE 77
+ + G + + LE
Sbjct: 289 DMFQACGPSASSVFSLE 305
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 48/58 (82%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFL 58
M L+ELVPGC+KV+G A +LDEIIN+VQSLQ+QVE+LSM++AA NP V+F +++
Sbjct: 190 MRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQVEFLSMKIAASNPVVNFNIVEDLF 247
>Os03g0802900 Similar to MYC1
Length = 265
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDNFLTT 60
M++L++LVPGC+KV G A VLDEIIN++Q+LQRQVE+LSM+L AVN V+ G++ F
Sbjct: 162 MKILQDLVPGCNKVIGKASVLDEIINYIQALQRQVEFLSMKLEAVNAHVN-NGIEAFPPK 220
Query: 61 ECG 63
+ G
Sbjct: 221 DFG 223
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 47/56 (83%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDN 56
M +L+ LVPGC KV+G AL+LDEIIN+VQSLQ QVE+LSMR+A+++P + G+D+
Sbjct: 167 MRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLYGFGMDS 222
>Os09g0510500 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 282
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 47/56 (83%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGGLDN 56
M +L+ LVPGC KV+G AL+LDEIIN+VQSLQ QVE+LSMR+A+++P + G+D+
Sbjct: 133 MRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASLSPVLYGFGIDS 188
>Os05g0103000 Similar to MYC1
Length = 339
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 50/57 (87%), Gaps = 2/57 (3%)
Query: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRV-DFG-GLD 55
M++L+ LVPGC KV+G AL+LDEII++VQSLQ QVE+LSM+LA+++P + +FG G+D
Sbjct: 206 MKMLQSLVPGCDKVTGKALMLDEIISYVQSLQNQVEFLSMKLASLSPLMYEFGPGID 262
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,634,050
Number of extensions: 227343
Number of successful extensions: 635
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 14
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)