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Os03g0728900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.95 (0.0344) R2 : 0.703
β1 : 3.58 (0.126) R2dD : 0.548 R2D : 0.345
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.943 (0.0736) R2dE : 0.107 R2E : 0.014
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.29 (0.0736) R2dN8 : 0.269 R2N8 : 0.0609
σ : 0.643
deviance : 190.69
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C
peak time of C : --
E
wheather : radiation
threshold : 14.92
memory length : 89
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
189.75 0.647 7.96 3.45 0.277 1.05 -0.9 -0.592 1.24 13.1 9.99 98 -- --
190.88 0.643 7.94 3.48 0.303 1.05 -0.574 -- 1.29 13.1 9.986 97 -- --
190.39 0.643 7.96 3.46 0.275 1.05 -- 0.0999 1.24 13.2 9.996 105 -- --
190.16 0.642 7.94 3.61 0.0965 0.988 -- -- 1.3 13.1 13.35 86 -- --
190.7 0.643 7.96 3.59 -- 0.936 -- 0.124 1.26 -- 14.92 90 -- --
217.72 0.692 7.98 3.5 0.809 -- 0.288 -- 1.21 0.63 -- -- -- --
218.07 0.692 7.98 3.49 0.808 -- -- -- 1.21 0.617 -- -- -- --
190.69 0.643 7.95 3.58 -- 0.943 -- -- 1.29 -- 14.92 89 -- --
520.39 1.06 8.1 -- 0.253 0.865 -- -- 0.864 0.0661 19.96 49 -- --
259.01 0.752 7.96 3.52 -- -- -- -- 1.22 -- -- -- -- --
539 1.09 8.07 -- 0.863 -- -- -- 0.821 0.811 -- -- -- --
509.9 1.05 8.03 -- -- 0.968 -- -- 1.06 -- 10 114 -- --
585.49 1.13 8.05 -- -- -- -- -- 0.834 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 184.34 wind 1.0 43200 < th dose independent rect. 6 1
2 184.80 temperature 25.0 4320 > th dose dependent rect. 18 15
5 185.24 temperature 25.0 4320 > th dose dependent rect. 5 3
10 185.68 wind 1.0 43200 < th dose dependent rect. 6 1
12 185.78 wind 1.0 43200 < th dose dependent rect. 16 11
13 185.93 temperature 25.0 4320 > th dose independent rect. 6 1
14 185.95 temperature 25.0 4320 > th dose independent rect. 5 3
15 185.97 wind 1.0 14400 < th dose dependent rect. 2 1
18 186.03 temperature 25.0 4320 < th dose independent rect. 5 3
25 186.31 temperature 25.0 4320 > th dose dependent sin 11 NA
29 186.47 temperature 25.0 4320 < th dose independent rect. 6 1
30 186.49 wind 1.0 43200 < th dose independent rect. 21 2
32 186.54 wind 1.0 43200 < th dose dependent rect. 17 9
38 186.77 temperature 25.0 4320 > th dose dependent rect. 17 11
42 186.79 radiation 10.0 43200 < th dose dependent rect. 7 1
45 186.81 temperature 25.0 4320 > th dose dependent rect. 18 3
47 186.87 radiation 10.0 43200 < th dose dependent rect. 6 4
53 187.07 wind 1.0 43200 < th dose dependent rect. 21 2
64 187.23 wind 1.0 43200 > th dose independent rect. 21 2
65 187.27 temperature 25.0 4320 > th dose dependent rect. 20 1
81 187.49 wind 1.0 43200 < th dose independent rect. 17 9
85 187.58 radiation 40.0 30 < th dose dependent rect. 11 23
90 187.63 wind 1.0 43200 > th dose independent rect. 20 5
94 187.65 radiation 10.0 43200 < th dose dependent rect. 21 14
108 187.71 radiation 10.0 90 < th dose independent rect. 4 13
131 187.94 wind 9.0 43200 > th dose independent rect. 16 6
132 187.95 wind 7.0 43200 > th dose independent rect. 18 4
133 187.95 radiation 20.0 30 < th dose independent rect. 5 10
139 187.99 radiation 10.0 43200 > th dose independent rect. 7 1
141 188.00 wind 9.0 43200 > th dose dependent rect. 14 9
142 188.01 wind 7.0 43200 > th dose independent rect. 19 1
169 188.17 wind 1.0 43200 > th dose independent rect. 17 9
188 188.29 wind 7.0 43200 < th dose independent rect. 18 5
211 188.41 radiation 30.0 30 < th dose dependent rect. 5 11
242 188.59 radiation 10.0 43200 < th dose dependent sin 7 NA
251 188.60 wind 9.0 43200 < th dose independent rect. 16 6
253 188.61 humidity 90.0 14400 > th dose dependent rect. 3 2
254 188.63 radiation 10.0 43200 > th dose independent rect. 17 15
255 188.64 radiation 20.0 43200 > th dose independent rect. 15 21
268 188.79 radiation 20.0 30 < th dose independent rect. 9 23
269 188.80 radiation 20.0 43200 < th dose independent rect. 9 1
277 188.86 radiation 30.0 43200 < th dose dependent rect. 9 1
285 188.94 radiation 20.0 30 < th dose independent sin 3 NA
313 189.00 atmosphere 1010.0 43200 < th dose dependent rect. 8 1
334 189.03 atmosphere 1005.0 43200 < th dose independent rect. 21 1
338 189.04 radiation 40.0 43200 > th dose independent rect. 14 20
371 189.23 radiation 40.0 30 < th dose dependent rect. 9 23
388 189.27 radiation 10.0 90 < th dose independent rect. 4 23
392 189.30 wind 7.0 43200 > th dose dependent rect. 17 5
411 189.41 wind 9.0 43200 > th dose independent rect. 16 2
415 189.42 radiation 20.0 43200 > th dose independent sin 11 NA
421 189.45 atmosphere 1010.0 43200 < th dose dependent rect. 22 1
423 189.45 radiation 1.0 30 > th dose dependent rect. 7 12
435 189.46 radiation 30.0 270 < th dose independent rect. 10 21
452 189.52 radiation 20.0 43200 > th dose independent rect. 7 5
475 189.57 radiation 40.0 90 < th dose dependent sin 2 NA
480 189.59 wind 7.0 43200 < th dose independent rect. 19 1
487 189.62 wind 9.0 14400 > th dose dependent rect. 22 17
494 189.67 radiation 40.0 270 < th dose dependent rect. 2 13
495 189.68 precipitation 0.1 43200 > th dose independent rect. 17 2
496 189.68 precipitation 0.1 43200 < th dose independent rect. 17 2
497 189.68 precipitation 0.1 43200 < th dose dependent rect. 17 2
503 189.70 precipitation 0.1 43200 > th dose dependent rect. 16 3
506 189.71 radiation 20.0 43200 > th dose independent rect. 7 10
521 189.72 radiation 20.0 43200 > th dose independent no NA NA
633 189.73 radiation 40.0 43200 > th dose independent sin 13 NA
660 189.80 atmosphere 1010.0 43200 < th dose dependent rect. 10 1
672 189.84 wind 9.0 14400 > th dose dependent rect. 13 3
684 189.85 radiation 20.0 43200 > th dose independent rect. 9 23
690 189.87 radiation 20.0 43200 > th dose independent sin 2 NA
726 189.91 wind 9.0 43200 > th dose independent rect. 14 8
817 190.04 wind 1.0 43200 > th dose independent rect. 6 2
823 190.05 radiation 10.0 90 < th dose independent no NA NA
824 190.05 wind 9.0 43200 < th dose independent rect. 17 1
825 190.05 temperature 30.0 4320 < th dose independent rect. 14 22
830 190.06 radiation 20.0 43200 > th dose independent rect. 9 1
876 190.16 radiation 40.0 43200 > th dose independent rect. 12 3
889 190.16 temperature 30.0 4320 < th dose independent rect. 1 15
900 190.17 temperature 30.0 4320 < th dose independent rect. 4 12
905 190.19 wind 9.0 43200 < th dose independent rect. 14 8
906 190.19 temperature 30.0 4320 < th dose independent rect. 8 8
930 190.23 radiation 20.0 30 < th dose independent rect. 13 23
938 190.25 radiation 1.0 90 > th dose dependent no NA NA