BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0728900 Os03g0728900|Os03g0728900
(327 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 682 0.0
Os09g0474100 Similar to TA1 protein (Fragment) 176 3e-44
Os06g0275600 Similar to TA1 protein (Fragment) 176 3e-44
Os01g0915600 Similar to TA1 protein (Fragment) 162 3e-40
Os04g0350700 Similar to Phytochrome-interacting factor 4 (B... 159 2e-39
Os08g0487700 Similar to TA1 protein (Fragment) 159 2e-39
Os09g0501600 Similar to MYC1 154 9e-38
Os08g0524800 Similar to TA1 protein (Fragment) 149 3e-36
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 146 2e-35
Os03g0802900 Similar to MYC1 141 8e-34
Os08g0536800 Similar to TA1 protein (Fragment) 135 4e-32
Os05g0103000 Similar to MYC1 135 5e-32
Os09g0510500 Similar to Phytochrome-interacting factor 4 (B... 132 3e-31
Os06g0184000 92 7e-19
Os06g0193400 Similar to Helix-loop-helix protein homolog 87 2e-17
Os03g0797600 Similar to Helix-loop-helix protein homolog 87 2e-17
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 86 5e-17
Os06g0613500 Similar to Helix-loop-helix protein homolog 83 3e-16
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 73 4e-13
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 72 5e-13
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 72 8e-13
Os08g0506700 Basic helix-loop-helix dimerisation region bHL... 72 8e-13
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 70 3e-12
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 69 4e-12
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 68 1e-11
Os01g0900800 Basic helix-loop-helix dimerisation region bHL... 67 1e-11
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 1 MYSGQQSDQCPGPNSGKEFLEVNWDSVALHQKMGYNSGAFGFQAYPMVLEDREGLYRSPN 60
MYSGQQSDQCPGPNSGKEFLEVNWDSVALHQKMGYNSGAFGFQAYPMVLEDREGLYRSPN
Sbjct: 1 MYSGQQSDQCPGPNSGKEFLEVNWDSVALHQKMGYNSGAFGFQAYPMVLEDREGLYRSPN 60
Query: 61 GTFCQNIQLSDDHSSGAKRRKGIDDHIALLNPSASSRIQNVGDQQTEVSSQQERISMEED 120
GTFCQNIQLSDDHSSGAKRRKGIDDHIALLNPSASSRIQNVGDQQTEVSSQQERISMEED
Sbjct: 61 GTFCQNIQLSDDHSSGAKRRKGIDDHIALLNPSASSRIQNVGDQQTEVSSQQERISMEED 120
Query: 121 NQKSCSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLV 180
NQKSCSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLV
Sbjct: 121 NQKSCSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLV 180
Query: 181 PGCSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRH 240
PGCSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRH
Sbjct: 181 PGCSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRH 240
Query: 241 LAFYGVDPGSSALVAHFNQGIMQPEMLCNVSNPADVLQGTTIQDISTVNQIPAMWEGLQN 300
LAFYGVDPGSSALVAHFNQGIMQPEMLCNVSNPADVLQGTTIQDISTVNQIPAMWEGLQN
Sbjct: 241 LAFYGVDPGSSALVAHFNQGIMQPEMLCNVSNPADVLQGTTIQDISTVNQIPAMWEGLQN 300
Query: 301 IPHLNYNPGGAMAEGSTNNSGSMKIEK 327
IPHLNYNPGGAMAEGSTNNSGSMKIEK
Sbjct: 301 IPHLNYNPGGAMAEGSTNNSGSMKIEK 327
>Os09g0474100 Similar to TA1 protein (Fragment)
Length = 428
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/141 (66%), Positives = 108/141 (76%), Gaps = 13/141 (9%)
Query: 141 KEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYV 200
KE+Y+HVRA+RGQATNSHSLAERLRR+KISERMKLLQDLVPGCSK+TGKAVMLDEIINYV
Sbjct: 242 KEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYV 301
Query: 201 QSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRHLAFYGVDPGSSALVAHFNQG 260
QSLQRQVEFLSMKLATVNP L +IE +LSK + L F GV P SS F+
Sbjct: 302 QSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDL-------LRFPGV-PSSS---IGFSPE 350
Query: 261 IMQPEMLCNVSNPADVLQGTT 281
+M P++ +S P + GT
Sbjct: 351 MMHPQL--QLSQPGLIHGGTA 369
>Os06g0275600 Similar to TA1 protein (Fragment)
Length = 437
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/137 (65%), Positives = 104/137 (75%), Gaps = 4/137 (2%)
Query: 102 GDQQTEVSSQQERISMEEDNQKSCS----KMQSKEDSSDGDGTKEDYVHVRAKRGQATNS 157
G+Q V S Q+ E+ K S K K+ + KEDY+HVRA+RGQATNS
Sbjct: 211 GEQLATVGSAQKNEDDEKGEPKRSSVASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNS 270
Query: 158 HSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATV 217
HSLAER+RR+KISERMK LQDLVPGCSK+TGKAVMLDEIINYVQSLQRQVEFLSMKLA+V
Sbjct: 271 HSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASV 330
Query: 218 NPELSFDIEQILSKQMM 234
NP L F+IE+ILSK +
Sbjct: 331 NPTLDFNIERILSKDIF 347
>Os01g0915600 Similar to TA1 protein (Fragment)
Length = 481
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 108/154 (70%), Gaps = 9/154 (5%)
Query: 127 KMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKI 186
K Q K+ SS +DY+HVRA+RG+AT+SHSLAER+RR+KIS+RMKLLQDLVPGC+K+
Sbjct: 257 KKQGKDSSSKPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKV 316
Query: 187 TGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPELSF-DIEQILSKQMMLS----QDRHL 241
GKAVMLDEIINYVQSLQRQVEFLSMKLATVNP+L F ++ +L+K M S Q H
Sbjct: 317 VGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPLQSSHF 376
Query: 242 AFYGVDPGSSALVAHFNQGIMQPEMLCNVSNPAD 275
S A + + NQ + C ++N D
Sbjct: 377 PLE----TSGAPLPYINQPQQGNPLGCGLTNGMD 406
>Os04g0350700 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 263
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 85/92 (92%)
Query: 142 EDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQ 201
+DY+HVRA+RGQAT+SHSLAER+RR++ISERMKLLQ LVPGC+KITGKA+MLDEIINYVQ
Sbjct: 76 KDYIHVRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQ 135
Query: 202 SLQRQVEFLSMKLATVNPELSFDIEQILSKQM 233
SLQRQVEFLSMKLAT+NP+L FD + SK M
Sbjct: 136 SLQRQVEFLSMKLATMNPQLDFDSHYMPSKDM 167
>Os08g0487700 Similar to TA1 protein (Fragment)
Length = 365
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 84/93 (90%)
Query: 137 GDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEI 196
G+ KE Y HVRA++GQATN+HSLAERLRR+KISERMKLLQDLVPGCSK+TGKA+MLDEI
Sbjct: 166 GEAQKEGYSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEI 225
Query: 197 INYVQSLQRQVEFLSMKLATVNPELSFDIEQIL 229
INYVQSLQRQVEFLSMKL+ VNP + DIE ++
Sbjct: 226 INYVQSLQRQVEFLSMKLSAVNPRIDLDIESLV 258
>Os09g0501600 Similar to MYC1
Length = 366
Score = 154 bits (389), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 72/96 (75%), Positives = 87/96 (90%), Gaps = 1/96 (1%)
Query: 142 EDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQ 201
+DYVHVRA+RGQAT+SHSLAER+RR+KIS+RMK+LQDLVPGC+K+ GKA+MLDEIINYVQ
Sbjct: 169 KDYVHVRARRGQATDSHSLAERVRREKISQRMKVLQDLVPGCNKVVGKALMLDEIINYVQ 228
Query: 202 SLQRQVEFLSMKLATVNPELSF-DIEQILSKQMMLS 236
SLQ+QVEFLSMKLATVNP+L F ++ +L K M S
Sbjct: 229 SLQQQVEFLSMKLATVNPQLDFGNLSTLLQKDMFQS 264
>Os08g0524800 Similar to TA1 protein (Fragment)
Length = 405
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 83/93 (89%)
Query: 142 EDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQ 201
+DYVHVRA+RGQAT+SHSLAER+RR++IS+RMK+LQDLVPGC+K+ GKA+MLDEIINYVQ
Sbjct: 199 KDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQ 258
Query: 202 SLQRQVEFLSMKLATVNPELSFDIEQILSKQMM 234
SLQRQVEFLSMKLATVNP ++ +L K M
Sbjct: 259 SLQRQVEFLSMKLATVNPLDFSNLPTLLQKDMF 291
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 85/96 (88%), Gaps = 1/96 (1%)
Query: 139 GTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIIN 198
G K DY+HVRA+RGQAT+SHSLAER+RR++ISERM+ LQ+LVPGC+K+TGKA MLDEIIN
Sbjct: 156 GQKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIIN 215
Query: 199 YVQSLQRQVEFLSMKLATVNPELSFDI-EQILSKQM 233
YVQSLQ+QVEFLSMK+A NP ++F+I E + +Q+
Sbjct: 216 YVQSLQKQVEFLSMKIAASNPVVNFNIVEDLFGRQL 251
>Os03g0802900 Similar to MYC1
Length = 265
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/109 (63%), Positives = 82/109 (75%), Gaps = 6/109 (5%)
Query: 141 KEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYV 200
K+DY+HVRA+RGQAT+SHSLAER RR+KISERMK+LQDLVPGC+K+ GKA +LDEIINY+
Sbjct: 130 KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYI 189
Query: 201 QSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRHLAFYGVDPG 249
Q+LQRQVEFLSMKL VN ++ IE K D Y PG
Sbjct: 190 QALQRQVEFLSMKLEAVNAHVNNGIEAFPPK------DFGAQVYNTAPG 232
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 80/91 (87%)
Query: 131 KEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKA 190
+E S+ D + Y+HVRA+RGQAT+SHSLAER+RR++ISERM++LQ LVPGC K+TGKA
Sbjct: 125 EEKSTTEDEPPKGYIHVRARRGQATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKA 184
Query: 191 VMLDEIINYVQSLQRQVEFLSMKLATVNPEL 221
++LDEIINYVQSLQ QVEFLSM++A+++P L
Sbjct: 185 LILDEIINYVQSLQNQVEFLSMRIASMSPVL 215
>Os05g0103000 Similar to MYC1
Length = 339
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 88/120 (73%), Gaps = 5/120 (4%)
Query: 100 NVGDQQTEVSSQQERISMEEDNQKSCSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHS 159
NVG + E + + + D+ ++ K + G Y+HVRA+RGQAT+SHS
Sbjct: 138 NVGLKGLEEKKARRVVLHQHDDD-----VKKKAKEAAGGEPPAGYIHVRARRGQATDSHS 192
Query: 160 LAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP 219
LAER+RR+KISERMK+LQ LVPGC K+TGKA+MLDEII+YVQSLQ QVEFLSMKLA+++P
Sbjct: 193 LAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIISYVQSLQNQVEFLSMKLASLSP 252
>Os09g0510500 Similar to Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
Length = 282
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 93/129 (72%), Gaps = 14/129 (10%)
Query: 107 EVSSQQERISMEEDNQKSCSKMQSKEDSSDG----------DGTKED----YVHVRAKRG 152
+ S Q ++ E++ S + SKE +G D +E+ ++HVRA+RG
Sbjct: 53 DTSPQDKKRKPREEDTASLNSAHSKEAKENGRKRGGKKHSRDQMEEEAPQGFIHVRARRG 112
Query: 153 QATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSM 212
QAT+SHSLAER+RR++ISERM++LQ LVPGC K+TGKA++LDEIINYVQSLQ QVEFLSM
Sbjct: 113 QATDSHSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSM 172
Query: 213 KLATVNPEL 221
++A+++P L
Sbjct: 173 RIASLSPVL 181
>Os06g0184000
Length = 430
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 61/80 (76%), Gaps = 2/80 (2%)
Query: 134 SSDGDGTKEDYVH-VRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVM 192
SS G GT VRA+RGQAT+ HS+AERLRR++I+ERMK LQ+LVP +K T KA M
Sbjct: 200 SSGGGGTAPPRQQRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANK-TDKASM 258
Query: 193 LDEIINYVQSLQRQVEFLSM 212
LDEII+YV+ LQ QV+ LSM
Sbjct: 259 LDEIIDYVKFLQLQVKVLSM 278
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 147 VRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 206
RA+RGQAT+ HS+AERLRR+KISERMK LQ LVP +K KA MLDEII+YV+ LQ Q
Sbjct: 316 TRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNK-ADKASMLDEIIDYVKFLQLQ 374
Query: 207 VEFLSM 212
V+ LSM
Sbjct: 375 VKVLSM 380
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 147 VRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 206
VRA+RGQAT+ HS+AERLRR++I+ERM+ LQ+LVP +K T +A MLDEI++YV+ L+ Q
Sbjct: 133 VRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNK-TDRAAMLDEILDYVKFLRLQ 191
Query: 207 VEFLSM 212
V+ LSM
Sbjct: 192 VKVLSM 197
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 54/64 (84%), Gaps = 2/64 (3%)
Query: 147 VRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKI--TGKAVMLDEIINYVQSLQ 204
VRA+RGQAT+ HS+AERLRR++I+ERMK LQ+LVP +K+ T KA MLDEII+YV+ LQ
Sbjct: 250 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQ 309
Query: 205 RQVE 208
QV+
Sbjct: 310 LQVK 313
>Os06g0613500 Similar to Helix-loop-helix protein homolog
Length = 154
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 47/51 (92%)
Query: 173 MKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPELSF 223
M+LL++LVPGCSK++G A++LDEIIN+VQSLQRQVE+LSM+LA VNP + F
Sbjct: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDF 51
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 147 VRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 206
+RAKRG AT+ S+AER+RR +ISER++ LQ+LVP K T A MLD ++Y++ LQ+Q
Sbjct: 319 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQKQ 378
Query: 207 VEFL 210
V+ L
Sbjct: 379 VKVL 382
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 122 QKSCSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVP 181
Q CS Q +D D G KR + H+L+ER RR +I+E+M+ LQ+L+P
Sbjct: 354 QAECSASQ-DDDLDDEPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQELIP 412
Query: 182 GCSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPEL 221
C+KI KA MLDE I Y+++LQ QV+ +SM P +
Sbjct: 413 NCNKID-KASMLDEAIEYLKTLQLQVQMMSMGTGLCIPPM 451
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 149 AKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVE 208
AKR +A H+L+ER RR +I+E+MK LQ+L+P C+K T KA MLDE I Y++SLQ Q++
Sbjct: 265 AKRRRAAEVHNLSERRRRDRINEKMKALQELIPHCNK-TDKASMLDEAIEYLKSLQLQLQ 323
Query: 209 FLSMKLATVNPELSF 223
+ M P + F
Sbjct: 324 MMWMGGGMAPPAVMF 338
>Os08g0506700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 399
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 147 VRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 206
+RAKRG AT+ S+AER+RR +ISER++ LQ+LVP K T A MLD ++Y++ LQ+Q
Sbjct: 318 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQ 377
Query: 207 VEFL 210
V+ L
Sbjct: 378 VKGL 381
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 13/111 (11%)
Query: 106 TEVSSQQERISMEEDNQKS----CSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLA 161
+E +S +R E+ + +S C + + SS G+K +R +A H+L+
Sbjct: 177 SESASAHKRKGREDSDSRSEDAECEATEETKSSSRRYGSK--------RRTRAAEVHNLS 228
Query: 162 ERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSM 212
ER RR +I+E+M+ LQ+L+P C+K T KA +LDE I Y++SLQ QV+ + M
Sbjct: 229 ERRRRDRINEKMRALQELIPHCNK-TDKASILDEAIEYLKSLQMQVQIMWM 278
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 149 AKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVE 208
+KR +A H+L+E+ RR KI+E+MK LQ L+P +K T KA MLDE I Y++ LQ QV+
Sbjct: 22 SKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNK-TDKASMLDEAIEYLKQLQLQVQ 80
Query: 209 FLSMKLAT-VNPE-LSFDIEQILSKQMM 234
LSM+ +NP LS +E + QM
Sbjct: 81 MLSMRNGVYLNPSYLSGALEPAQASQMF 108
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 6/73 (8%)
Query: 145 VHVRA-----KRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINY 199
VH R+ KR + H+L+ER RR +I+E+M+ LQ+L+P C+KI KA ML+E I Y
Sbjct: 322 VHRRSAARSSKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKI-DKASMLEEAIEY 380
Query: 200 VQSLQRQVEFLSM 212
+++LQ QV+ +SM
Sbjct: 381 LKTLQLQVQMMSM 393
>Os01g0900800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 387
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 44/64 (68%)
Query: 147 VRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 206
RAKRG AT+ S+AER RR +IS+R+K LQDLVP K T + MLD + Y++ LQ Q
Sbjct: 309 ARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQGQ 368
Query: 207 VEFL 210
VE L
Sbjct: 369 VEKL 372
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,098,136
Number of extensions: 443556
Number of successful extensions: 1327
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 1339
Number of HSP's successfully gapped: 27
Length of query: 327
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 226
Effective length of database: 11,762,187
Effective search space: 2658254262
Effective search space used: 2658254262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)