Os08g0506700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os08g0506700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.47 | 0.28 | 12.9 | -0.653 | 0.712 | 0.803 | -0.589 | 1.03 | 0.0988 | 1.44 | 3.475 | 71 | -- | -- |
| 36.01 | 0.28 | 12.9 | -0.613 | 0.734 | 0.807 | 0.577 | -- | 0.113 | 1.82 | 3.712 | 43 | -- | -- |
| 35.11 | 0.276 | 12.9 | -0.635 | 0.763 | 0.77 | -- | 0.598 | 0.0996 | 1.76 | 3.838 | 45 | -- | -- |
| 37.07 | 0.284 | 12.9 | -0.626 | 0.783 | 0.768 | -- | -- | 0.0935 | 1.78 | 3.61 | 41 | -- | -- |
| 41.97 | 0.302 | 12.9 | -0.607 | -- | 1.3 | -- | 0.823 | 0.202 | -- | 2.912 | 89 | -- | -- |
| 46.12 | 0.318 | 13 | -0.623 | 1.64 | -- | 0.622 | -- | 0.0515 | 0.817 | -- | -- | -- | -- |
| 47.76 | 0.324 | 13 | -0.646 | 1.63 | -- | -- | -- | 0.0481 | 0.834 | -- | -- | -- | -- |
| 42.24 | 0.303 | 12.9 | -0.582 | -- | 1.33 | -- | -- | 0.154 | -- | 3.658 | 108 | -- | -- |
| 47.25 | 0.32 | 12.9 | -- | 0.757 | 0.784 | -- | -- | 0.155 | 1.85 | 2.772 | 39 | -- | -- |
| 214.53 | 0.684 | 12.9 | -0.586 | -- | -- | -- | -- | 0.0784 | -- | -- | -- | -- | -- |
| 58.77 | 0.359 | 12.9 | -- | 1.62 | -- | -- | -- | 0.12 | 0.817 | -- | -- | -- | -- |
| 51.29 | 0.334 | 12.9 | -- | -- | 1.33 | -- | -- | 0.204 | -- | 2.77 | 120 | -- | -- |
| 223.6 | 0.698 | 12.9 | -- | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.32 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 19 | 21 |
| 5 | 36.78 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 6 | 36.86 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 7 | 36.93 | radiation | 1.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 8 | 36.94 | radiation | 1.0 | 30 | > th | dose independent | no | NA | NA |
| 9 | 36.94 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 64 | 36.95 | radiation | 1.0 | 30 | < th | dose independent | no | NA | NA |
| 65 | 36.95 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 21 |
| 71 | 36.95 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 72 | 36.95 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 73 | 36.98 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 74 | 36.99 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 19 |
| 83 | 37.10 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 21 |
| 87 | 37.14 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 17 |
| 95 | 37.18 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 97 | 37.24 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 173 | 37.42 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 174 | 37.44 | radiation | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 175 | 37.44 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 198 | 37.48 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 211 | 37.54 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 15 |
| 219 | 37.56 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 11 | 18 |
| 245 | 37.64 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 15 |
| 251 | 37.69 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 13 | 16 |
| 262 | 37.76 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 15 |
| 301 | 37.93 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 13 |
| 303 | 37.95 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 378 | 38.18 | humidity | 80.0 | 30 | > th | dose independent | rect. | 10 | 19 |
| 382 | 38.19 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 408 | 38.26 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 411 | 38.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 454 | 38.35 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 457 | 38.36 | radiation | 1.0 | 90 | > th | dose independent | rect. | 15 | 23 |
| 462 | 38.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 468 | 38.38 | humidity | 80.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 493 | 38.43 | radiation | 10.0 | 30 | < th | dose dependent | sin | 11 | NA |
| 498 | 38.43 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 500 | 38.44 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 505 | 38.45 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 512 | 38.46 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 11 | 9 |
| 522 | 38.47 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 538 | 38.49 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 556 | 38.50 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 10 |
| 562 | 38.52 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 573 | 38.52 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 14 |
| 578 | 38.53 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 607 | 38.56 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 608 | 38.56 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 609 | 38.56 | temperature | 30.0 | 90 | < th | dose independent | rect. | 11 | 9 |
| 676 | 38.58 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 18 |
| 713 | 38.60 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 716 | 38.60 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 735 | 38.61 | radiation | 1.0 | 30 | > th | dose independent | rect. | 16 | 19 |
| 794 | 38.63 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 820 | 38.65 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 823 | 38.65 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 834 | 38.66 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 837 | 38.66 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 845 | 38.67 | temperature | 30.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 862 | 38.67 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 864 | 38.68 | temperature | 30.0 | 14400 | < th | dose independent | sin | 15 | NA |