BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0506700 Os08g0506700|AK100106
(399 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0506700 Basic helix-loop-helix dimerisation region bHL... 494 e-140
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 272 3e-73
Os01g0900800 Basic helix-loop-helix dimerisation region bHL... 132 4e-31
Os04g0489600 Basic helix-loop-helix dimerisation region bHL... 129 4e-30
Os02g0603600 Similar to Phytochrome-interacting factor 3 (P... 70 3e-12
>Os08g0506700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 399
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 265/399 (66%), Positives = 265/399 (66%)
Query: 1 MYGSPVSKDLNLPVQPPAMSSSGLLRYRSAPSTLLAEFCXXXXXXXXXXXXXXXXXXNVF 60
MYGSPVSKDLNLPVQPPAMSSSGLLRYRSAPSTLLAEFC NVF
Sbjct: 1 MYGSPVSKDLNLPVQPPAMSSSGLLRYRSAPSTLLAEFCDDFLPPAAAPRAASPDADNVF 60
Query: 61 SRFLADHQIRDKSPPXXXXXXXXXXHFPDDPTMATXXXXXXXXXXXXXXXXXASVEGLYR 120
SRFLADHQIRDKSPP HFPDDPTMAT ASVEGLYR
Sbjct: 61 SRFLADHQIRDKSPPATAAAAAAAAHFPDDPTMATQHHHQQQMMFQHHPQQMASVEGLYR 120
Query: 121 TVSSTXXXXXXXXXXXXXXXXXXLLRQSSSPAGFLNHLNMDNGYGSMLRXXXXXXXXXXX 180
TVSST LLRQSSSPAGFLNHLNMDNGYGSMLR
Sbjct: 121 TVSSTGIDAATAAANAAGGGGGGLLRQSSSPAGFLNHLNMDNGYGSMLRAGMAAAGGGVG 180
Query: 181 XXXXXXXXXXXXXXXXXXXRLKGQLSFSSRQGSLMSQISEMDSEELXXXXXXXXXXXXXX 240
RLKGQLSFSSRQGSLMSQISEMDSEEL
Sbjct: 181 FRNGANAAAAADSPGGSGGRLKGQLSFSSRQGSLMSQISEMDSEELGGSSPEGAGGGGGG 240
Query: 241 XXXXXXXXYPMSSGWEESSLMSDTNISGVKRQRDSSEPSQNXXXXXXLAHQFSLPKTSSE 300
YPMSSGWEESSLMSDTNISGVKRQRDSSEPSQN LAHQFSLPKTSSE
Sbjct: 241 GGRGYLSGYPMSSGWEESSLMSDTNISGVKRQRDSSEPSQNGGGGGGLAHQFSLPKTSSE 300
Query: 301 MAAIEKFLQFQDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQTNT 360
MAAIEKFLQFQDAVPCKIRAKRGCATHPRSIA KLQELVPNMDKQTNT
Sbjct: 301 MAAIEKFLQFQDAVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNT 360
Query: 361 ADMLDLAVDYIKDLQKQVKGLNDSRANCTCSAKHQQYSG 399
ADMLDLAVDYIKDLQKQVKGLNDSRANCTCSAKHQQYSG
Sbjct: 361 ADMLDLAVDYIKDLQKQVKGLNDSRANCTCSAKHQQYSG 399
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 272 bits (696), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 193/441 (43%), Positives = 216/441 (48%), Gaps = 87/441 (19%)
Query: 1 MYGSPVSKDLNL-PV---QPPAMSSSGLLRYRSAPSTLLAEFC--------------XXX 42
MYG+PVSKDL+L P PP MSS GLLRYRSAPSTLL E C
Sbjct: 1 MYGAPVSKDLSLQPAGVRTPPQMSSPGLLRYRSAPSTLLGEVCGDFVLPGGGGGGGQLQL 60
Query: 43 XXXXXXXXXXXXXXXNVFSRFLADHQIRDKSPPXXXXXXXXXXHF-PDDPTMATXXXXXX 101
V +RFLA H D PP HF P + +MA+
Sbjct: 61 QLQQQRPGSPDHAADTVLARFLAGHGGHDNKPPRPAA------HFAPPEDSMASHQQQLM 114
Query: 102 XXXXXXXXXXXASVEGLYRTVSSTXXXXXXXXXXXXXXXXXXLLRQSSSPAGFLNHLNMD 161
+++EGLYRTVSS LLRQSSSPAGFLNHL MD
Sbjct: 115 YQSHQQQQQMASAMEGLYRTVSSGGTESTAAAAGNS------LLRQSSSPAGFLNHLTMD 168
Query: 162 NGYGSMLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLKGQLSFSSRQGSLMSQISEM 221
NGYG+MLR RLKGQLSFSSRQGS+MSQISEM
Sbjct: 169 NGYGNMLRAGMGGGGGGGDP------------------RLKGQLSFSSRQGSVMSQISEM 210
Query: 222 DSE--ELXX---XXXXXXXXXXXXXXXXXXXXYPMSSGWEE-----SSLMSDTNISGVKR 271
SE EL SS WEE +SL+ D+++ KR
Sbjct: 211 GSEDEELAGGGGSPEAGSNGGGAARGGYGGGYAMGSSAWEEPSPPATSLLPDSSLPS-KR 269
Query: 272 QRDSSEPSQNXXXXXXLAHQFSLPKTSSEMAA---------------IEKFLQFQDAVPC 316
RD L Q SLP S + IEKFLQFQDAVPC
Sbjct: 270 PRDD------------LPRQLSLPAASKNSSKPPSSASAAASPEMAAIEKFLQFQDAVPC 317
Query: 317 KIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 376
KIRAKRGCATHPRSIA KLQELVPNM+KQTNTADMLDLAVDYIK+LQK
Sbjct: 318 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQK 377
Query: 377 QVKGLNDSRANCTCSAKHQQY 397
QVK LNDSR++CTCSA Q++
Sbjct: 378 QVKVLNDSRSSCTCSASKQKH 398
>Os01g0900800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 387
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 291 QFSLPKTSS-EMAAIEKFLQFQ-DAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQ 348
QF L K SS EMA ++ FLQ Q D+V C+ RAKRGCATHPRSIA KLQ
Sbjct: 280 QFGLSKQSSLEMAGMDDFLQLQPDSVACRARAKRGCATHPRSIAERERRTRISKRLKKLQ 339
Query: 349 ELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRANCTCSAKH 394
+LVPNMDKQTNT+DMLD+AV YIK+LQ QV+ L +ANCTCS KH
Sbjct: 340 DLVPNMDKQTNTSDMLDIAVTYIKELQGQVEKLKHDQANCTCSGKH 385
>Os04g0489600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 369
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 122/265 (46%), Gaps = 32/265 (12%)
Query: 144 LLRQSSSPAGFLNHLNMDNGYGSMLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLKG 203
L R +SSP GF + MDNG+ S R ++K
Sbjct: 113 LTRHNSSPPGFFSSPVMDNGFSSSARPAGSSLGEVRHGAMSSSSNNNK--------KMKA 164
Query: 204 QLSF-SSRQGSL-MSQISEMDSEELXXXXXXXXXXXXXXXXXXXXXXY---PMSSG---- 254
LSF SSRQGS +SQISE +L + SSG
Sbjct: 165 PLSFASSRQGSGGLSQISEDGIPDLTDSIHGAAHHHGRSEENVSTHDHVVRSFSSGGFSI 224
Query: 255 --WEESS---LMSDTNISGVKRQRDSSEPSQNXXXXXXLAHQFSLPKTSSEMAAIEKFLQ 309
WE+S+ + T SG D N Q P+ EMA +EK+LQ
Sbjct: 225 GSWEDSNSIVFSTSTGKSGAHGNDDIIATLSNYES------QLVAPR---EMAGVEKYLQ 275
Query: 310 FQ-DAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDLAV 368
Q D VP ++RAKRGCATHPRSIA KLQ LVPNMDKQT+T+DMLDLAV
Sbjct: 276 MQHDQVPFRVRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAV 335
Query: 369 DYIKDLQKQVKGLNDSRANCTCSAK 393
D+IK LQ Q++ L + + CTCS K
Sbjct: 336 DHIKGLQSQLQTLKEDKEKCTCSCK 360
>Os02g0603600 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 60
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 39/48 (81%)
Query: 346 KLQELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRANCTCSAK 393
KLQELVPNMDKQT+TADMLDLAV++IK LQ Q++ L + CTC ++
Sbjct: 12 KLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSR 59
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,257,342
Number of extensions: 202827
Number of successful extensions: 476
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 6
Length of query: 399
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 296
Effective length of database: 11,657,759
Effective search space: 3450696664
Effective search space used: 3450696664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)