Os04g0489600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0489600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.15	(0.079)	R²	:	0.647
β₁	:	-3	(0.286)	R²_dD	:	0.0888	R²_D	:	0.101
β₂	:	4.2	(0.195)	R²_dC	:	0.366	R²_C	:	0.28
β₃	:	-3.48	(0.199)	R²_dE	:	0.279	R²_E	:	0.181
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.452	(0.178)	R²_dN8	:	0.00774	R²_N8	:	-0.00955
σ	:	1.45
deviance	:	972.35
__

_____

C
peak time of C	:	3.17
E
wheather	:	radiation
threshold	:	40.65
memory length	:	1412
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	13.9
open length of G	:	19

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
952.42	1.45	6.16	-3.97	4.17	-3.29	-2.35	-4.03	0.0689	3.28	40.21	1429	14	19
954.74	1.44	6.15	-3.3	4.27	-3.45	-2.34	--	0.342	3.22	40.64	1413	13.9	19
958.33	1.44	6.16	-3.99	4.2	-3.21	--	-4.19	0.0807	3.19	40.71	1414	14	19
972.35	1.45	6.15	-3	4.2	-3.48	--	--	0.452	3.17	40.65	1412	13.9	19
1807.58	1.98	6.13	-3.6	--	-4.63	--	-1.9	0.184	--	35.84	1791	13.9	19
1610.69	1.88	6.3	-3.56	3.81	--	-3.18	--	-0.589	3.29	--	--	--	--
1642.96	1.9	6.29	-3.5	3.79	--	--	--	-0.57	3.26	--	--	--	--
1824.8	1.99	6.14	-3.54	--	-4.62	--	--	0.415	--	35.82	1795	13.9	18.9
1207.52	1.62	6.15	--	4.15	-3.61	--	--	0.756	3.15	40.64	1410	13.9	19
2457.76	2.32	6.28	-3.34	--	--	--	--	-0.47	--	--	--	--	--
1966.2	2.07	6.2	--	3.72	--	--	--	-0.18	3.25	--	--	--	--
1990.52	2.08	6.18	--	--	-5.82	--	--	0.51	--	30.04	1960	13.8	21.2
2752.19	2.45	6.2	--	--	--	--	--	-0.0995	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	848.61	temperature	30	14400	< th	dose independent	rect.	12	1
2	849.49	temperature	30	14400	> th	dose independent	rect.	12	1
15	859.39	temperature	25	14400	> th	dose dependent	sin	10	NA
20	861.65	temperature	25	14400	> th	dose dependent	rect.	19	16
23	861.96	temperature	30	14400	< th	dose independent	rect.	10	14
24	861.96	temperature	30	14400	< th	dose independent	rect.	10	22
27	861.98	temperature	30	14400	< th	dose independent	rect.	10	9
29	862.00	temperature	30	14400	< th	dose independent	rect.	10	17
30	862.00	temperature	30	14400	< th	dose independent	rect.	10	19
45	862.61	temperature	25	14400	> th	dose dependent	rect.	18	9
65	862.89	temperature	30	14400	< th	dose independent	rect.	17	22
72	863.32	temperature	30	14400	> th	dose independent	rect.	10	9
139	864.57	temperature	30	14400	> th	dose dependent	rect.	14	1
144	864.81	temperature	30	14400	< th	dose independent	sin	23	NA
152	865.19	temperature	30	14400	> th	dose independent	rect.	17	22
170	865.26	temperature	30	14400	< th	dose independent	rect.	4	11
171	865.26	temperature	30	14400	< th	dose independent	rect.	2	13
172	865.27	temperature	30	14400	< th	dose independent	rect.	21	18
176	865.30	temperature	30	14400	< th	dose independent	rect.	6	9
202	865.78	temperature	30	14400	< th	dose independent	rect.	4	20
203	865.78	temperature	30	14400	< th	dose independent	rect.	2	22
206	865.80	temperature	30	14400	< th	dose independent	rect.	4	15
207	865.80	temperature	30	14400	< th	dose independent	rect.	2	17
208	865.80	temperature	30	14400	< th	dose independent	rect.	6	18
217	865.81	temperature	30	14400	< th	dose independent	rect.	22	21
219	865.81	temperature	30	14400	< th	dose independent	rect.	4	23
237	865.84	temperature	30	14400	< th	dose independent	no	NA	NA
313	866.56	temperature	30	14400	> th	dose independent	sin	22	NA
368	867.71	temperature	30	14400	> th	dose independent	no	NA	NA
622	870.31	temperature	30	14400	> th	dose dependent	rect.	12	7
820	874.56	temperature	25	14400	> th	dose dependent	rect.	9	1
834	874.98	temperature	25	14400	> th	dose independent	rect.	22	11
836	875.01	temperature	25	14400	< th	dose independent	rect.	23	10
861	875.71	temperature	25	14400	> th	dose dependent	no	NA	NA
876	875.91	temperature	25	14400	> th	dose dependent	rect.	6	23
911	876.22	temperature	25	14400	> th	dose dependent	rect.	22	1