Os01g0900800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os01g0900800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.7 | 0.523 | 11.8 | 0.84 | 2.11 | -2.1 | -0.188 | 0.557 | 0.799 | 23.3 | 10.01 | 725 | -- | -- |
| 123.98 | 0.519 | 11.9 | 0.817 | 2.12 | -2.09 | -0.16 | -- | 0.784 | 23.3 | 10.01 | 730 | -- | -- |
| 123.7 | 0.518 | 11.8 | 0.855 | 2.13 | -2.09 | -- | 0.56 | 0.804 | 23.3 | 10.02 | 731 | -- | -- |
| 124.02 | 0.519 | 11.8 | 0.838 | 2.15 | -2.11 | -- | -- | 0.805 | 23.3 | 10.02 | 738 | -- | -- |
| 138.08 | 0.547 | 11.8 | 0.812 | -- | -1.93 | -- | 0.017 | 0.686 | -- | 4.44 | 246 | -- | -- |
| 166.84 | 0.606 | 11.9 | 0.491 | 2.36 | -- | -0.0887 | -- | 0.519 | 1.89 | -- | -- | -- | -- |
| 166.87 | 0.605 | 11.9 | 0.494 | 2.36 | -- | -- | -- | 0.52 | 1.89 | -- | -- | -- | -- |
| 134.13 | 0.539 | 11.8 | 0.59 | -- | -2.04 | -- | -- | 0.606 | -- | 4.29 | 249 | -- | -- |
| 135.77 | 0.543 | 11.9 | -- | 2.07 | -2.4 | -- | -- | 0.575 | 22.9 | 6.29 | 728 | -- | -- |
| 503.85 | 1.05 | 11.9 | 0.591 | -- | -- | -- | -- | 0.574 | -- | -- | -- | -- | -- |
| 173.3 | 0.616 | 11.9 | -- | 2.37 | -- | -- | -- | 0.465 | 1.9 | -- | -- | -- | -- |
| 142 | 0.555 | 11.9 | -- | -- | -2.06 | -- | -- | 0.55 | -- | 4.25 | 253 | -- | -- |
| 513.06 | 1.06 | 11.9 | -- | -- | -- | -- | -- | 0.509 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.71 | humidity | 60 | 30 | > th | dose dependent | sin | 19 | NA |
| 2 | 120.78 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 22 |
| 9 | 121.26 | radiation | 10 | 720 | > th | dose independent | rect. | 13 | 19 |
| 12 | 121.52 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 13 | 121.60 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 24 | 122.54 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 32 | 122.81 | humidity | 70 | 720 | > th | dose independent | rect. | 8 | 21 |
| 33 | 122.82 | radiation | 10 | 720 | > th | dose independent | sin | 13 | NA |
| 36 | 122.91 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 11 |
| 39 | 123.09 | humidity | 70 | 720 | > th | dose independent | rect. | 1 | 19 |
| 43 | 123.14 | humidity | 90 | 90 | < th | dose dependent | sin | 19 | NA |
| 44 | 123.25 | radiation | 10 | 720 | < th | dose dependent | rect. | 8 | 12 |
| 46 | 123.32 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 61 | 123.67 | humidity | 70 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 62 | 123.68 | radiation | 20 | 720 | < th | dose dependent | rect. | 8 | 21 |
| 68 | 123.79 | radiation | 20 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 70 | 123.84 | radiation | 10 | 720 | > th | dose independent | rect. | 6 | 12 |
| 82 | 123.85 | radiation | 10 | 720 | > th | dose independent | no | NA | NA |
| 165 | 124.24 | radiation | 10 | 720 | > th | dose independent | sin | 21 | NA |
| 166 | 124.25 | radiation | 10 | 720 | < th | dose dependent | sin | 14 | NA |
| 183 | 124.49 | radiation | 20 | 720 | < th | dose dependent | rect. | 23 | 21 |
| 186 | 124.55 | humidity | 90 | 90 | < th | dose dependent | no | NA | NA |
| 190 | 124.58 | humidity | 90 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 193 | 124.61 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 194 | 124.61 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 21 |
| 195 | 124.61 | humidity | 90 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 239 | 125.00 | humidity | 70 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 245 | 125.06 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 259 | 125.10 | humidity | 90 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 282 | 125.31 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 22 |
| 303 | 125.46 | humidity | 70 | 90 | > th | dose dependent | rect. | 11 | 10 |
| 307 | 125.49 | humidity | 90 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 311 | 125.53 | radiation | 10 | 720 | < th | dose dependent | sin | 21 | NA |
| 319 | 125.64 | radiation | 10 | 720 | > th | dose independent | rect. | 16 | 23 |
| 351 | 125.82 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 7 |
| 418 | 126.21 | humidity | 90 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 450 | 126.42 | humidity | 80 | 90 | > th | dose independent | rect. | 7 | 13 |
| 472 | 126.56 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 23 |
| 490 | 126.63 | humidity | 80 | 720 | < th | dose dependent | rect. | 13 | 22 |
| 524 | 126.79 | humidity | 80 | 90 | < th | dose independent | sin | 20 | NA |
| 539 | 126.85 | radiation | 10 | 720 | < th | dose independent | rect. | 13 | 7 |
| 564 | 127.02 | humidity | 70 | 720 | < th | dose independent | rect. | 13 | 22 |
| 587 | 127.17 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 624 | 127.39 | radiation | 1 | 720 | > th | dose dependent | sin | 13 | NA |
| 628 | 127.41 | radiation | 10 | 720 | < th | dose independent | rect. | 13 | 16 |
| 630 | 127.41 | radiation | 20 | 720 | < th | dose dependent | no | NA | NA |
| 642 | 127.47 | humidity | 50 | 90 | > th | dose dependent | no | NA | NA |
| 656 | 127.52 | radiation | 10 | 720 | < th | dose independent | rect. | 11 | 9 |
| 665 | 127.56 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 673 | 127.61 | humidity | 70 | 720 | > th | dose independent | no | NA | NA |
| 684 | 127.64 | radiation | 1 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 692 | 127.68 | humidity | 70 | 720 | > th | dose independent | sin | 20 | NA |
| 698 | 127.71 | radiation | 10 | 720 | < th | dose independent | sin | 15 | NA |
| 709 | 127.74 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 710 | 127.75 | humidity | 80 | 720 | < th | dose dependent | no | NA | NA |
| 714 | 127.76 | humidity | 80 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 732 | 127.81 | humidity | 80 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 741 | 127.84 | humidity | 80 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 848 | 128.11 | radiation | 10 | 720 | > th | dose independent | rect. | 12 | 6 |
| 881 | 128.19 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 3 |
| 914 | 128.24 | humidity | 70 | 720 | < th | dose independent | rect. | 9 | 23 |
| 954 | 128.32 | humidity | 80 | 90 | > th | dose independent | sin | 20 | NA |
| 983 | 128.38 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 23 |
| 989 | 128.40 | radiation | 10 | 720 | < th | dose independent | rect. | 11 | 18 |