BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0900800 Os01g0900800|AK068254
(387 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0900800 Basic helix-loop-helix dimerisation region bHL... 504 e-143
Os04g0489600 Basic helix-loop-helix dimerisation region bHL... 164 1e-40
Os08g0506700 Basic helix-loop-helix dimerisation region bHL... 154 1e-37
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 135 5e-32
Os02g0603600 Similar to Phytochrome-interacting factor 3 (P... 86 5e-17
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 72 5e-13
Os06g0184000 72 9e-13
Os05g0103000 Similar to MYC1 68 9e-12
Os06g0275600 Similar to TA1 protein (Fragment) 68 1e-11
Os03g0728900 Basic helix-loop-helix dimerisation region bHL... 67 2e-11
>Os01g0900800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 387
Score = 504 bits (1297), Expect = e-143, Method: Compositional matrix adjust.
Identities = 265/387 (68%), Positives = 265/387 (68%)
Query: 1 MNRMTXXXXXXXXXXXXXXXXXXRYGSAPGSLLASIADSVIRGRGVGVVDXXXXXXXXXX 60
MNRMT RYGSAPGSLLASIADSVIRGRGVGVVD
Sbjct: 1 MNRMTAPHGGMPPPPMPAAGGLARYGSAPGSLLASIADSVIRGRGVGVVDQLHHHQHQHQ 60
Query: 61 XXXXXXXXXXXMVGRYFSAESSGLXXXXXXXXXXXXXXXXXXXDVGRHPLERAYGGSGEI 120
MVGRYFSAESSGL DVGRHPLERAYGGSGEI
Sbjct: 61 LPPPPPPQQQQMVGRYFSAESSGLTSCESSCRTTTTTSTAAAADVGRHPLERAYGGSGEI 120
Query: 121 HVDASSAAVPLFRHSSSPAGLLSRLMADPHGNGMXXXXXXXXXXXXXXXXXXXXHRRLSS 180
HVDASSAAVPLFRHSSSPAGLLSRLMADPHGNGM HRRLSS
Sbjct: 121 HVDASSAAVPLFRHSSSPAGLLSRLMADPHGNGMAATRGMGGYSGGGGDAGAMAHRRLSS 180
Query: 181 QWSFSRQDLPQISEMGGLIPDIGESIVTXXXXXXXXXXXXXXAQXXXXXXXXXXXXXXWD 240
QWSFSRQDLPQISEMGGLIPDIGESIVT AQ WD
Sbjct: 181 QWSFSRQDLPQISEMGGLIPDIGESIVTGGGGNSSSDGAGHGAQSSSFLSSRNFSMSSWD 240
Query: 241 DTNSIMFXXXXXXXXXXXXXXXXGDHGDDMVSSFSNIDSQFGLSKQSSLEMAGMDDFLQL 300
DTNSIMF GDHGDDMVSSFSNIDSQFGLSKQSSLEMAGMDDFLQL
Sbjct: 241 DTNSIMFSPPSSSKKARVAAAAAGDHGDDMVSSFSNIDSQFGLSKQSSLEMAGMDDFLQL 300
Query: 301 QPDSVACRARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVT 360
QPDSVACRARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVT
Sbjct: 301 QPDSVACRARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVT 360
Query: 361 YIKELQGQVEKLKHDQANCTCSGKHDC 387
YIKELQGQVEKLKHDQANCTCSGKHDC
Sbjct: 361 YIKELQGQVEKLKHDQANCTCSGKHDC 387
>Os04g0489600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 369
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/266 (40%), Positives = 140/266 (52%), Gaps = 30/266 (11%)
Query: 131 LFRHSSSPAGLLSRLMADPHGNGMXXXXXXXXXX-----XXXXXXXXXXHRRLSSQWSF- 184
L RH+SSP G S + D NG ++++ + SF
Sbjct: 113 LTRHNSSPPGFFSSPVMD---NGFSSSARPAGSSLGEVRHGAMSSSSNNNKKMKAPLSFA 169
Query: 185 -SRQD---LPQISEMGGLIPDIGESI-VTXXXXXXXXXXXXXXAQXXXXXXXXXXXXXXW 239
SRQ L QISE G IPD+ +SI W
Sbjct: 170 SSRQGSGGLSQISEDG--IPDLTDSIHGAAHHHGRSEENVSTHDHVVRSFSSGGFSIGSW 227
Query: 240 DDTNSIMFXXXXXXXXXXXXXXXXGDHG-DDMVSSFSNIDSQFGLSKQSSLEMAGMDDFL 298
+D+NSI+F G HG DD++++ SN +SQ + EMAG++ +L
Sbjct: 228 EDSNSIVFSTSTGKS---------GAHGNDDIIATLSNYESQLVAPR----EMAGVEKYL 274
Query: 299 QLQPDSVACRARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIA 358
Q+Q D V R RAKRGCATHPRSIAERERRTRIS++L+KLQ LVPNMDKQT+TSDMLD+A
Sbjct: 275 QMQHDQVPFRVRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLA 334
Query: 359 VTYIKELQGQVEKLKHDQANCTCSGK 384
V +IK LQ Q++ LK D+ CTCS K
Sbjct: 335 VDHIKGLQSQLQTLKEDKEKCTCSCK 360
>Os08g0506700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 399
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 88/106 (83%), Gaps = 2/106 (1%)
Query: 280 QFGLSKQSSLEMAGMDDFLQLQPDSVACRARAKRGCATHPRSIAERERRTRISKRLKKLQ 339
QF L K SS EMA ++ FLQ Q D+V C+ RAKRGCATHPRSIAER RRTRIS+R++KLQ
Sbjct: 291 QFSLPKTSS-EMAAIEKFLQFQ-DAVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQ 348
Query: 340 DLVPNMDKQTNTSDMLDIAVTYIKELQGQVEKLKHDQANCTCSGKH 385
+LVPNMDKQTNT+DMLD+AV YIK+LQ QV+ L +ANCTCS KH
Sbjct: 349 ELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRANCTCSAKH 394
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 77/90 (85%), Gaps = 1/90 (1%)
Query: 294 MDDFLQLQPDSVACRARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSD 353
++ FLQ Q D+V C+ RAKRGCATHPRSIAER RRTRIS+R++KLQ+LVPNM+KQTNT+D
Sbjct: 305 IEKFLQFQ-DAVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTNTAD 363
Query: 354 MLDIAVTYIKELQGQVEKLKHDQANCTCSG 383
MLD+AV YIKELQ QV+ L +++CTCS
Sbjct: 364 MLDLAVDYIKELQKQVKVLNDSRSSCTCSA 393
>Os02g0603600 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 60
Score = 85.9 bits (211), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/59 (66%), Positives = 51/59 (86%)
Query: 326 ERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQGQVEKLKHDQANCTCSGK 384
ERRTRIS++L+KLQ+LVPNMDKQT+T+DMLD+AV +IK LQ Q++ LKH+Q CTC +
Sbjct: 1 ERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSR 59
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 308 RARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDK--QTNTSDMLDIAVTYIKEL 365
R RA+RG AT P SIAER RR RI++R+K LQ+LVPN +K QT+ + MLD + Y+K L
Sbjct: 249 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFL 308
Query: 366 QGQVE 370
Q QV+
Sbjct: 309 QLQVK 313
>Os06g0184000
Length = 430
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 308 RARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQG 367
R RA+RG AT P SIAER RR RI++R+K LQ+LVPN +K T+ + MLD + Y+K LQ
Sbjct: 213 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANK-TDKASMLDEIIDYVKFLQL 271
Query: 368 QVEKL 372
QV+ L
Sbjct: 272 QVKVL 276
>Os05g0103000 Similar to MYC1
Length = 339
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 301 QPDSVACRARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVT 360
+P + RA+RG AT S+AER RR +IS+R+K LQ LVP DK T + MLD ++
Sbjct: 172 EPPAGYIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIIS 231
Query: 361 YIKELQGQVEKL 372
Y++ LQ QVE L
Sbjct: 232 YVQSLQNQVEFL 243
>Os06g0275600 Similar to TA1 protein (Fragment)
Length = 437
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 272 SSFSNIDSQFGLSKQSSLEMAGMDDFLQLQ-----PDSVACRARAKRGCATHPRSIAERE 326
S+ N D + G K+SS+ +G Q++ P RA+RG AT+ S+AER
Sbjct: 219 SAQKNEDDEKGEPKRSSV-ASGKSSGKQIKDNAGSPKEDYIHVRARRGQATNSHSLAERV 277
Query: 327 RRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQGQVEKL 372
RR +IS+R+K LQDLVP K T + MLD + Y++ LQ QVE L
Sbjct: 278 RREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFL 323
>Os03g0728900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 327
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 44/64 (68%)
Query: 309 ARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQGQ 368
RAKRG AT+ S+AER RR +IS+R+K LQDLVP K T + MLD + Y++ LQ Q
Sbjct: 147 VRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQ 206
Query: 369 VEKL 372
VE L
Sbjct: 207 VEFL 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,996,659
Number of extensions: 284396
Number of successful extensions: 902
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 10
Length of query: 387
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 284
Effective length of database: 11,657,759
Effective search space: 3310803556
Effective search space used: 3310803556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)