Os09g0487900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os09g0487900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.97 | 0.488 | 10.5 | 0.802 | 1.31 | -1.67 | -0.212 | 2.11 | 0.287 | 23.4 | 25.39 | 775 | -- | -- |
| 109.7 | 0.488 | 10.6 | 0.582 | 1.41 | -1.5 | 0.13 | -- | 0.189 | 23.6 | 25.59 | 845 | -- | -- |
| 108.05 | 0.484 | 10.5 | 0.798 | 1.32 | -1.66 | -- | 1.98 | 0.284 | 23.4 | 25.43 | 790 | -- | -- |
| 108.55 | 0.485 | 10.5 | 0.474 | 1.31 | -1.41 | -- | -- | 0.202 | 23.9 | 25.59 | 874 | -- | -- |
| 145.52 | 0.565 | 10.5 | 0.802 | -- | -1.87 | -- | 1.72 | 0.501 | -- | 20.61 | 19 | -- | -- |
| 154.94 | 0.584 | 10.6 | 0.124 | 1.04 | -- | -0.341 | -- | 0.111 | 0.978 | -- | -- | -- | -- |
| 155.43 | 0.584 | 10.6 | 0.136 | 1.04 | -- | -- | -- | 0.113 | 0.981 | -- | -- | -- | -- |
| 148.34 | 0.57 | 10.5 | 0.508 | -- | -1.76 | -- | -- | 0.412 | -- | 21.03 | 17 | -- | -- |
| 113.83 | 0.497 | 10.6 | -- | 1.3 | -1.27 | -- | -- | 0.119 | 23.9 | 25.9 | 858 | -- | -- |
| 222.63 | 0.697 | 10.5 | 0.175 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 155.92 | 0.584 | 10.6 | -- | 1.04 | -- | -- | -- | 0.0974 | 0.987 | -- | -- | -- | -- |
| 154.8 | 0.581 | 10.5 | -- | -- | -1.68 | -- | -- | 0.34 | -- | 21.1 | 8 | -- | -- |
| 223.44 | 0.698 | 10.6 | -- | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.53 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 6 | 107.42 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 5 |
| 9 | 107.67 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 13 | 107.85 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 15 | 108.09 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 10 | 12 |
| 16 | 108.11 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 30 | 108.38 | temperature | 25.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 39 | 108.46 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 48 | 108.64 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 92 | 108.76 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 98 | 108.78 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 101 | 108.80 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 133 | 109.12 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 8 | 19 |
| 172 | 109.58 | humidity | 60.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 186 | 109.77 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 188 | 109.78 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 12 |
| 209 | 110.12 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 225 | 110.28 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 229 | 110.33 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 12 |
| 236 | 110.38 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 239 | 110.45 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 241 | 110.46 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 259 | 110.65 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 14 |
| 279 | 110.81 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 285 | 110.87 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 287 | 110.87 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 306 | 110.94 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 323 | 110.95 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 361 | 111.04 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 387 | 111.12 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 6 |
| 405 | 111.20 | temperature | 30.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 413 | 111.22 | temperature | 30.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 443 | 111.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 7 |
| 460 | 111.39 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 9 |
| 507 | 111.52 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 520 | 111.55 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 20 |
| 566 | 111.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 592 | 111.72 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 19 |
| 629 | 111.79 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 665 | 111.88 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 22 | 22 |
| 667 | 111.89 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 20 |
| 771 | 112.13 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 787 | 112.17 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 791 | 112.19 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 826 | 112.22 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 831 | 112.22 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 20 | 21 |
| 840 | 112.23 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 842 | 112.23 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 947 | 112.24 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 19 |
| 953 | 112.25 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 959 | 112.25 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 13 |
| 996 | 112.25 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 21 |