BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0487900 Os09g0487900|AK120902
(401 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G42280.1 | chr2:17611428-17613163 REVERSE LENGTH=360 135 3e-32
AT1G51140.1 | chr1:18943802-18945613 REVERSE LENGTH=380 118 7e-27
AT1G05805.1 | chr1:1744843-1747427 FORWARD LENGTH=363 106 2e-23
AT1G35460.1 | chr1:13040092-13041907 FORWARD LENGTH=260 106 3e-23
AT2G43140.2 | chr2:17931680-17935639 REVERSE LENGTH=310 101 7e-22
AT4G09180.1 | chr4:5847513-5849500 FORWARD LENGTH=263 100 1e-21
AT2G24260.1 | chr2:10319646-10322177 REVERSE LENGTH=351 67 1e-11
AT4G30980.1 | chr4:15079489-15081606 REVERSE LENGTH=311 66 4e-11
AT5G58010.1 | chr5:23483670-23484889 REVERSE LENGTH=298 60 3e-09
AT4G02590.1 | chr4:1137968-1140306 REVERSE LENGTH=311 57 1e-08
AT1G03040.1 | chr1:704279-706457 REVERSE LENGTH=303 57 1e-08
AT5G33210.1 | chr5:12465057-12465713 REVERSE LENGTH=174 49 4e-06
>AT2G42280.1 | chr2:17611428-17613163 REVERSE LENGTH=360
Length = 359
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 74/93 (79%)
Query: 305 IEKFLQFQDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADM 364
++K+LQ QD+VPCKIRAKRGCATHPRSIA KLQELVPNM+KQTNT+DM
Sbjct: 265 VDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDM 324
Query: 365 LDLAVDYIKELQKQVKVLNDSRSSCTCSASKQK 397
LDLAVDYIK+LQ+Q K+LND+R++C C ++K
Sbjct: 325 LDLAVDYIKDLQRQYKILNDNRANCKCMNKEKK 357
>AT1G51140.1 | chr1:18943802-18945613 REVERSE LENGTH=380
Length = 379
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 305 IEKFLQFQDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADM 364
IE+ L D++PCKIRAKRGCATHPRSIA KLQ+LVPNM+ QTNTADM
Sbjct: 292 IEQLLS--DSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADM 349
Query: 365 LDLAVDYIKELQKQVKVLNDSRSSCTCSAS 394
LDLAV YIK+LQ+QVK L +SR+ C CS++
Sbjct: 350 LDLAVQYIKDLQEQVKALEESRARCRCSSA 379
>AT1G05805.1 | chr1:1744843-1747427 FORWARD LENGTH=363
Length = 362
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
Query: 305 IEKFLQF-QDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTAD 363
++ F+Q +D+VPCKIRAKRGCATHPRSIA KLQ+LVPNM+KQT+ +D
Sbjct: 268 MDNFMQLPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSD 327
Query: 364 MLDLAVDYIKELQKQVKVLNDSRSSCTCSASKQ 396
MLDLAV +IK LQ Q++ L + +CTC S++
Sbjct: 328 MLDLAVQHIKGLQHQLQNLKKDQENCTCGCSEK 360
>AT1G35460.1 | chr1:13040092-13041907 FORWARD LENGTH=260
Length = 259
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 59/81 (72%)
Query: 311 FQDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADMLDLAVD 370
F+D+VPC++RAKRGCATHPRSIA +LQELVPNM+KQTNTADML+ AV+
Sbjct: 173 FEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVE 232
Query: 371 YIKELQKQVKVLNDSRSSCTC 391
Y+K LQ Q++ L + + C C
Sbjct: 233 YVKALQSQIQELTEQQKRCKC 253
>AT2G43140.2 | chr2:17931680-17935639 REVERSE LENGTH=310
Length = 309
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 59/86 (68%)
Query: 312 QDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADMLDLAVDY 371
+D+VPC+ RAKRG ATHPRSIA KLQELVPNM+KQT+ ADMLDLAV++
Sbjct: 224 EDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEH 283
Query: 372 IKELQKQVKVLNDSRSSCTCSASKQK 397
IK LQ QV+ L CTC A K++
Sbjct: 284 IKGLQHQVESLEKGMERCTCGACKKR 309
>AT4G09180.1 | chr4:5847513-5849500 FORWARD LENGTH=263
Length = 262
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 58/81 (71%)
Query: 311 FQDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADMLDLAVD 370
+D+V ++RAKRGCATHPRSIA KLQELVPNM+KQTNTADML+ AV+
Sbjct: 176 MEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVE 235
Query: 371 YIKELQKQVKVLNDSRSSCTC 391
Y+K LQ+Q++ L + + CTC
Sbjct: 236 YVKVLQRQIQELTEEQKRCTC 256
>AT2G24260.1 | chr2:10319646-10322177 REVERSE LENGTH=351
Length = 350
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 317 CKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADMLDLAVDYIKELQ 376
KIRA+RG AT P SIA LQELVPN K T+ A MLD +DY+K LQ
Sbjct: 136 TKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQ 194
Query: 377 KQVKVLNDSRSSCTCSASKQKHFAG 401
QVKVL+ SR S S Q AG
Sbjct: 195 LQVKVLSMSRLGGAASVSSQISEAG 219
>AT4G30980.1 | chr4:15079489-15081606 REVERSE LENGTH=311
Length = 310
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 318 KIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADMLDLAVDYIKELQK 377
K+RA+RG AT P SIA LQELVPN K T+ A MLD +DY+K LQ
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187
Query: 378 QVKVLNDSRSSCTCSASKQ 396
QVKVL+ SR SAS Q
Sbjct: 188 QVKVLSMSRLGGAASASSQ 206
>AT5G58010.1 | chr5:23483670-23484889 REVERSE LENGTH=298
Length = 297
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 318 KIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADMLDLAVDYIKELQK 377
++RA+RG AT P SIA LQELVPN K T+ A MLD ++Y++ LQ
Sbjct: 98 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156
Query: 378 QVKVLNDSR 386
QVKVL+ SR
Sbjct: 157 QVKVLSMSR 165
>AT4G02590.1 | chr4:1137968-1140306 REVERSE LENGTH=311
Length = 310
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 318 KIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADMLDLAVDYIKELQK 377
++RA+RG AT P SIA LQELVP + K T+ A M+D VDY+K L+
Sbjct: 145 RVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNK-TDRAAMIDEIVDYVKFLRL 203
Query: 378 QVKVLNDSR 386
QVKVL+ SR
Sbjct: 204 QVKVLSMSR 212
>AT1G03040.1 | chr1:704279-706457 REVERSE LENGTH=303
Length = 302
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 312 QDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADMLDLAVDY 371
Q + ++RA+RG AT P SIA LQELVP + K T+ A M+D VDY
Sbjct: 137 QSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNK-TDRAAMIDEIVDY 195
Query: 372 IKELQKQVKVLNDSR 386
+K L+ QVKVL+ SR
Sbjct: 196 VKFLRLQVKVLSMSR 210
>AT5G33210.1 | chr5:12465057-12465713 REVERSE LENGTH=174
Length = 173
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 23/23 (100%)
Query: 311 FQDAVPCKIRAKRGCATHPRSIA 333
F+D+VPC++RAKRGCATHPRSIA
Sbjct: 9 FEDSVPCRVRAKRGCATHPRSIA 31
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,267,626
Number of extensions: 178148
Number of successful extensions: 463
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 12
Length of query: 401
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,337,553
Effective search space: 2501265900
Effective search space used: 2501265900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)