BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0487900 Os09g0487900|AK120902
(401 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 510 e-145
Os08g0506700 Basic helix-loop-helix dimerisation region bHL... 264 7e-71
Os01g0900800 Basic helix-loop-helix dimerisation region bHL... 112 6e-25
Os04g0489600 Basic helix-loop-helix dimerisation region bHL... 111 1e-24
Os02g0603600 Similar to Phytochrome-interacting factor 3 (P... 66 5e-11
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 274/401 (68%), Positives = 274/401 (68%)
Query: 1 MYGAPVSKDLSLQPAGVRTPPQMSSPGLLRYRSAPSTLLGEVCGDFVLPXXXXXXXXXXX 60
MYGAPVSKDLSLQPAGVRTPPQMSSPGLLRYRSAPSTLLGEVCGDFVLP
Sbjct: 1 MYGAPVSKDLSLQPAGVRTPPQMSSPGLLRYRSAPSTLLGEVCGDFVLPGGGGGGGQLQL 60
Query: 61 XXXXXRPGSPDHAADTVLARFLAGHGGHDNKPPRPAAHFAPPEDSMAXXXXXXXXXXXXX 120
RPGSPDHAADTVLARFLAGHGGHDNKPPRPAAHFAPPEDSMA
Sbjct: 61 QLQQQRPGSPDHAADTVLARFLAGHGGHDNKPPRPAAHFAPPEDSMASHQQQLMYQSHQQ 120
Query: 121 XXXXASAMEGLYRXXXXXXXXXXXXXXXNSLLRQSSSPAGFLNHLTMDNGYGNMLRAXXX 180
ASAMEGLYR NSLLRQSSSPAGFLNHLTMDNGYGNMLRA
Sbjct: 121 QQQMASAMEGLYRTVSSGGTESTAAAAGNSLLRQSSSPAGFLNHLTMDNGYGNMLRAGMG 180
Query: 181 XXXXXXDPRLKGQLSFSSRQGSVMSQISEMGSEDEELXXXXXXXXXXXXXXXXXXXXXXX 240
DPRLKGQLSFSSRQGSVMSQISEMGSEDEEL
Sbjct: 181 GGGGGGDPRLKGQLSFSSRQGSVMSQISEMGSEDEELAGGGGSPEAGSNGGGAARGGYGG 240
Query: 241 XXXXXXXXWEEPSPPATSLLPDSSLPSKRPRDDLPRQLXXXXXXXXXXXXXXXXXXXXXX 300
WEEPSPPATSLLPDSSLPSKRPRDDLPRQL
Sbjct: 241 GYAMGSSAWEEPSPPATSLLPDSSLPSKRPRDDLPRQLSLPAASKNSSKPPSSASAAASP 300
Query: 301 XXXXIEKFLQFQDAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTN 360
IEKFLQFQDAVPCKIRAKRGCATHPRSIA KLQELVPNMEKQTN
Sbjct: 301 EMAAIEKFLQFQDAVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMEKQTN 360
Query: 361 TADMLDLAVDYIKELQKQVKVLNDSRSSCTCSASKQKHFAG 401
TADMLDLAVDYIKELQKQVKVLNDSRSSCTCSASKQKHFAG
Sbjct: 361 TADMLDLAVDYIKELQKQVKVLNDSRSSCTCSASKQKHFAG 401
>Os08g0506700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 399
Score = 264 bits (675), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 189/430 (43%), Positives = 212/430 (49%), Gaps = 65/430 (15%)
Query: 1 MYGAPVSKDLSLQPAGVRTPPQMSSPGLLRYRSAPSTLLGEVCGDFVLPXXXXXXXXXXX 60
MYG+PVSKDL+L P PP MSS GLLRYRSAPSTLL E C DF+ P
Sbjct: 1 MYGSPVSKDLNL-PV---QPPAMSSSGLLRYRSAPSTLLAEFCDDFLPPAAAPRAASP-- 54
Query: 61 XXXXXRPGSPDHAADTVLARFLAGHGGHDNKPPRPAA------HFAPPEDSMAXXXXXXX 114
AD V +RFLA H D PP AA HF P + +MA
Sbjct: 55 ------------DADNVFSRFLADHQIRDKSPPATAAAAAAAAHF-PDDPTMATQHHHQQ 101
Query: 115 XXXXXXXXXXASAMEGLYRXXXXX------XXXXXXXXXXNSLLRQSSSPAGFLNHLTMD 168
+++EGLYR LLRQSSSPAGFLNHL MD
Sbjct: 102 QMMFQHHPQQMASVEGLYRTVSSTGIDAATAAANAAGGGGGGLLRQSSSPAGFLNHLNMD 161
Query: 169 NGYGNMLRAXXXXXXXX------------------XDPRLKGQLSFSSRQGSVMSQISEM 210
NGYG+MLRA RLKGQLSFSSRQGS+MSQISEM
Sbjct: 162 NGYGSMLRAGMAAAGGGVGFRNGANAAAAADSPGGSGGRLKGQLSFSSRQGSLMSQISEM 221
Query: 211 GSEDEELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEEPSPPATSLLPDSSLPS-KR 269
SE+ WEE +SL+ D+++ KR
Sbjct: 222 DSEE-----LGGSSPEGAGGGGGGGGRGYLSGYPMSSGWEE-----SSLMSDTNISGVKR 271
Query: 270 PRDDL-PRQLXXXXXXXXXXXXXXXXXXXXXXXXXXIEKFLQFQDAVPCKIRAKRGCATH 328
RD P Q IEKFLQFQDAVPCKIRAKRGCATH
Sbjct: 272 QRDSSEPSQ----NGGGGGGLAHQFSLPKTSSEMAAIEKFLQFQDAVPCKIRAKRGCATH 327
Query: 329 PRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTADMLDLAVDYIKELQKQVKVLNDSRSS 388
PRSIA KLQELVPNM+KQTNTADMLDLAVDYIK+LQKQVK LNDSR++
Sbjct: 328 PRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRAN 387
Query: 389 CTCSASKQKH 398
CTCSA Q++
Sbjct: 388 CTCSAKHQQY 397
>Os01g0900800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 387
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 305 IEKFLQFQ-DAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTAD 363
++ FLQ Q D+V C+ RAKRGCATHPRSIA KLQ+LVPNM+KQTNT+D
Sbjct: 294 MDDFLQLQPDSVACRARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSD 353
Query: 364 MLDLAVDYIKELQKQVKVLNDSRSSCTCSA 393
MLD+AV YIKELQ QV+ L +++CTCS
Sbjct: 354 MLDIAVTYIKELQGQVEKLKHDQANCTCSG 383
>Os04g0489600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 369
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Query: 305 IEKFLQFQ-DAVPCKIRAKRGCATHPRSIAXXXXXXXXXXXXXKLQELVPNMEKQTNTAD 363
+EK+LQ Q D VP ++RAKRGCATHPRSIA KLQ LVPNM+KQT+T+D
Sbjct: 270 VEKYLQMQHDQVPFRVRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSD 329
Query: 364 MLDLAVDYIKELQKQVKVLNDSRSSCTCS 392
MLDLAVD+IK LQ Q++ L + + CTCS
Sbjct: 330 MLDLAVDHIKGLQSQLQTLKEDKEKCTCS 358
>Os02g0603600 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 60
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 38/47 (80%)
Query: 347 KLQELVPNMEKQTNTADMLDLAVDYIKELQKQVKVLNDSRSSCTCSA 393
KLQELVPNM+KQT+TADMLDLAV++IK LQ Q++ L + CTC +
Sbjct: 12 KLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCS 58
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,606,260
Number of extensions: 325024
Number of successful extensions: 796
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 792
Number of HSP's successfully gapped: 6
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)