Os02g0603600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008).
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Os02g0603600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.64 | 0.696 | 10.7 | -1.08 | 1.17 | -1.6 | -0.355 | -0.967 | -0.689 | 0.453 | 26.22 | 5494 | -- | -- |
| 219.75 | 0.69 | 10.7 | -0.858 | 1.17 | -1.68 | -0.344 | -- | -0.681 | 0.428 | 26.55 | 5466 | -- | -- |
| 220.06 | 0.691 | 10.7 | -1.06 | 1.17 | -1.6 | -- | -0.901 | -0.701 | 0.39 | 26.4 | 5469 | -- | -- |
| 220.27 | 0.691 | 10.7 | -0.835 | 1.17 | -1.68 | -- | -- | -0.664 | 0.384 | 26.51 | 5467 | -- | -- |
| 294.78 | 0.8 | 10.6 | -0.865 | -- | -1.53 | -- | -0.195 | -0.538 | -- | 26.26 | 5935 | -- | -- |
| 328.2 | 0.849 | 10.7 | -1.43 | 1.01 | -- | -0.607 | -- | -0.709 | 0.305 | -- | -- | -- | -- |
| 329.75 | 0.85 | 10.7 | -1.41 | 1.01 | -- | -- | -- | -0.705 | 0.19 | -- | -- | -- | -- |
| 294.78 | 0.8 | 10.6 | -0.827 | -- | -1.55 | -- | -- | -0.535 | -- | 26.3 | 5941 | -- | -- |
| 236.28 | 0.716 | 10.7 | -- | 1.18 | -1.92 | -- | -- | -0.52 | 0.374 | 25.9 | 5472 | -- | -- |
| 393.7 | 0.927 | 10.7 | -1.37 | -- | -- | -- | -- | -0.69 | -- | -- | -- | -- | -- |
| 381.83 | 0.914 | 10.7 | -- | 0.989 | -- | -- | -- | -0.549 | 0.113 | -- | -- | -- | -- |
| 294.89 | 0.8 | 10.4 | -- | -- | -1.82 | -- | -- | 0.411 | -- | 26.2 | 16084 | -- | -- |
| 443.43 | 0.983 | 10.6 | -- | -- | -- | -- | -- | -0.538 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 209.89 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 3 | 209.95 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 4 | 210.08 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 14 | 211.14 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 18 | 211.39 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 22 | 211.50 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 14 |
| 29 | 211.80 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 5 |
| 31 | 211.83 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 33 | 211.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 34 | 211.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 36 | 211.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 61 | 212.05 | temperature | 30 | 14400 | < th | dose independent | sin | 6 | NA |
| 124 | 212.32 | temperature | 30 | 14400 | > th | dose independent | sin | 5 | NA |
| 160 | 212.50 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 172 | 212.64 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 173 | 212.65 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 183 | 212.74 | temperature | 30 | 14400 | > th | dose dependent | rect. | 11 | 8 |
| 254 | 212.84 | temperature | 30 | 14400 | > th | dose dependent | sin | 19 | NA |
| 257 | 212.84 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 354 | 212.86 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 360 | 212.90 | temperature | 30 | 14400 | < th | dose independent | sin | 10 | NA |
| 378 | 212.98 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 387 | 212.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 396 | 212.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 407 | 212.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 412 | 213.00 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 413 | 213.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 421 | 213.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 428 | 213.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 19 |
| 435 | 213.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 21 |
| 436 | 213.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 564 | 213.12 | temperature | 30 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 578 | 213.13 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 710 | 213.22 | temperature | 30 | 14400 | > th | dose dependent | sin | 11 | NA |
| 714 | 213.27 | temperature | 30 | 14400 | > th | dose independent | sin | 10 | NA |
| 942 | 214.08 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 1 |