BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0603600 Os02g0603600|AK110833
(60 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0603600 Similar to Phytochrome-interacting factor 3 (P... 122 6e-29
Os04g0489600 Basic helix-loop-helix dimerisation region bHL... 101 2e-22
Os08g0506700 Basic helix-loop-helix dimerisation region bHL... 86 4e-18
Os01g0900800 Basic helix-loop-helix dimerisation region bHL... 85 1e-17
Os09g0487900 Basic helix-loop-helix dimerisation region bHL... 83 4e-17
>Os02g0603600 Similar to Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008)
Length = 60
Score = 122 bits (306), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 ERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSRP 60
ERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSRP
Sbjct: 1 ERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSRP 60
>Os04g0489600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 369
Score = 101 bits (251), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/59 (83%), Positives = 54/59 (91%)
Query: 1 ERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSR 59
ERRTRISEKLRKLQ LVPNMDKQTST+DMLDLAV+HIKGLQSQLQ LK ++EKCTC +
Sbjct: 302 ERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQSQLQTLKEDKEKCTCSCK 360
>Os08g0506700 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 399
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 49/58 (84%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSR 59
RRTRISE++RKLQELVPNMDKQT+TADMLDLAV++IK LQ Q++ L + CTC ++
Sbjct: 336 RRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRANCTCSAK 393
>Os01g0900800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 387
Score = 84.7 bits (208), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/59 (66%), Positives = 51/59 (86%)
Query: 1 ERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSR 59
ERRTRIS++L+KLQ+LVPNMDKQT+T+DMLD+AV +IK LQ Q++ LKH+Q CTC +
Sbjct: 326 ERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVTYIKELQGQVEKLKHDQANCTCSGK 384
>Os09g0487900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 401
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 48/57 (84%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCS 58
RRTRISE++RKLQELVPNM+KQT+TADMLDLAV++IK LQ Q++ L + CTC +
Sbjct: 337 RRTRISERIRKLQELVPNMEKQTNTADMLDLAVDYIKELQKQVKVLNDSRSSCTCSA 393
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,610,758
Number of extensions: 39131
Number of successful extensions: 275
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 5
Length of query: 60
Length of database: 17,035,801
Length adjustment: 32
Effective length of query: 28
Effective length of database: 15,364,953
Effective search space: 430218684
Effective search space used: 430218684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)