BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0603600 Os02g0603600|AK110833
(60 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05805.1 | chr1:1744843-1747427 FORWARD LENGTH=363 96 3e-21
AT2G43140.2 | chr2:17931680-17935639 REVERSE LENGTH=310 89 7e-19
AT4G09180.1 | chr4:5847513-5849500 FORWARD LENGTH=263 85 6e-18
AT1G35460.1 | chr1:13040092-13041907 FORWARD LENGTH=260 83 3e-17
AT1G51140.1 | chr1:18943802-18945613 REVERSE LENGTH=380 82 4e-17
AT2G42280.1 | chr2:17611428-17613163 REVERSE LENGTH=360 78 9e-16
AT1G09530.1 | chr1:3077216-3079367 FORWARD LENGTH=525 49 4e-07
AT4G36930.1 | chr4:17414167-17415945 FORWARD LENGTH=374 49 5e-07
AT5G67110.1 | chr5:26785332-26786338 REVERSE LENGTH=211 49 6e-07
AT2G24260.1 | chr2:10319646-10322177 REVERSE LENGTH=351 47 2e-06
AT5G58010.1 | chr5:23483670-23484889 REVERSE LENGTH=298 46 3e-06
AT4G30980.1 | chr4:15079489-15081606 REVERSE LENGTH=311 45 5e-06
AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374 45 6e-06
AT5G50915.1 | chr5:20710764-20712252 REVERSE LENGTH=287 45 6e-06
AT1G10120.1 | chr1:3304228-3305984 REVERSE LENGTH=367 45 7e-06
AT1G25330.1 | chr1:8880515-8882018 REVERSE LENGTH=224 45 7e-06
AT4G34530.1 | chr4:16498466-16499946 FORWARD LENGTH=336 45 8e-06
>AT1G05805.1 | chr1:1744843-1747427 FORWARD LENGTH=363
Length = 362
Score = 96.3 bits (238), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/59 (79%), Positives = 52/59 (88%), Gaps = 1/59 (1%)
Query: 1 ERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTC-CS 58
ERRTRIS KL+KLQ+LVPNMDKQTS +DMLDLAV+HIKGLQ QLQ LK +QE CTC CS
Sbjct: 300 ERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGCS 358
>AT2G43140.2 | chr2:17931680-17935639 REVERSE LENGTH=310
Length = 309
Score = 88.6 bits (218), Expect = 7e-19, Method: Composition-based stats.
Identities = 44/56 (78%), Positives = 50/56 (89%)
Query: 1 ERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTC 56
ERRTRIS KL+KLQELVPNMDKQTS ADMLDLAVEHIKGLQ Q+++L+ E+CTC
Sbjct: 248 ERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVESLEKGMERCTC 303
>AT4G09180.1 | chr4:5847513-5849500 FORWARD LENGTH=263
Length = 262
Score = 85.1 bits (209), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 50/58 (86%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSR 59
RRTRIS+++RKLQELVPNMDKQT+TADML+ AVE++K LQ Q+Q L EQ++CTC +
Sbjct: 202 RRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTCIPK 259
>AT1G35460.1 | chr1:13040092-13041907 FORWARD LENGTH=260
Length = 259
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 49/55 (89%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTC 56
RRTRIS+++R+LQELVPNMDKQT+TADML+ AVE++K LQSQ+Q L +Q++C C
Sbjct: 199 RRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRCKC 253
>AT1G51140.1 | chr1:18943802-18945613 REVERSE LENGTH=380
Length = 379
Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 49/57 (85%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCS 58
RRT+ISE++RKLQ+LVPNMD QT+TADMLDLAV++IK LQ Q++AL+ + +C C S
Sbjct: 322 RRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRARCRCSS 378
>AT2G42280.1 | chr2:17611428-17613163 REVERSE LENGTH=360
Length = 359
Score = 78.2 bits (191), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCCSR 59
RRTRISE++RKLQELVPNMDKQT+T+DMLDLAV++IK LQ Q + L + C C ++
Sbjct: 297 RRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANCKCMNK 354
>AT1G09530.1 | chr1:3077216-3079367 FORWARD LENGTH=525
Length = 524
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQAL 47
RR RI+EK+R LQEL+PN +K A MLD A+E++K LQ Q+Q +
Sbjct: 355 RRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKSLQLQVQIM 399
>AT4G36930.1 | chr4:17414167-17415945 FORWARD LENGTH=374
Length = 373
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQAL 47
RR+RI+EK++ LQ L+PN +K T A MLD A+E++K LQ Q+Q L
Sbjct: 209 RRSRINEKMKALQSLIPNSNK-TDKASMLDEAIEYLKQLQLQVQML 253
>AT5G67110.1 | chr5:26785332-26786338 REVERSE LENGTH=211
Length = 210
Score = 48.5 bits (114), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Query: 1 ERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQAL 47
+RR++I+EK++ LQ+L+PN +K T A MLD A+E++K LQ Q+Q L
Sbjct: 104 KRRSKINEKMKALQKLIPNSNK-TDKASMLDEAIEYLKQLQLQVQTL 149
>AT2G24260.1 | chr2:10319646-10322177 REVERSE LENGTH=351
Length = 350
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQAL 47
RR RI+E+++ LQELVPN +K T A MLD ++++K LQ Q++ L
Sbjct: 156 RRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQLQVKVL 200
>AT5G58010.1 | chr5:23483670-23484889 REVERSE LENGTH=298
Length = 297
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALK 48
RR RI+E+++ LQELVPN +K T A MLD +E+++ LQ Q++ L
Sbjct: 117 RRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQLQVKVLS 162
>AT4G30980.1 | chr4:15079489-15081606 REVERSE LENGTH=311
Length = 310
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALK 48
RR RI+E+++ LQELVPN +K T A MLD ++++K LQ Q++ L
Sbjct: 148 RRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQLQVKVLS 193
>AT3G21330.1 | chr3:7507720-7508841 FORWARD LENGTH=374
Length = 373
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 1 ERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKH 49
+RR RISEK+R LQ LVP K TA MLD A ++K L++Q++AL++
Sbjct: 286 QRRERISEKIRVLQTLVPGGTKM-DTASMLDEAANYLKFLRAQVKALEN 333
>AT5G50915.1 | chr5:20710764-20712252 REVERSE LENGTH=287
Length = 286
Score = 45.4 bits (106), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQAL 47
RR +ISE++R LQ LVP DK T A MLD + +++ LQ+Q++ L
Sbjct: 154 RREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFL 199
>AT1G10120.1 | chr1:3304228-3305984 REVERSE LENGTH=367
Length = 366
Score = 45.1 bits (105), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQAL 47
RR +ISE++R LQELVP +K T A MLD + +++ LQ Q++ L
Sbjct: 224 RREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFL 269
>AT1G25330.1 | chr1:8880515-8882018 REVERSE LENGTH=224
Length = 223
Score = 45.1 bits (105), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQALKHEQEKCTCC 57
RR +I+E+L+ LQ+LVP K A MLD+ +++++ LQ+Q++ L + + C
Sbjct: 122 RREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAASAC 177
>AT4G34530.1 | chr4:16498466-16499946 FORWARD LENGTH=336
Length = 335
Score = 45.1 bits (105), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 2 RRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQSQLQAL 47
RR +ISE+++ LQ+LVP DK T A MLD + +++ LQ Q++ L
Sbjct: 190 RREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFL 235
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,077,942
Number of extensions: 27212
Number of successful extensions: 286
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 23
Length of query: 60
Length of database: 11,106,569
Length adjustment: 33
Effective length of query: 27
Effective length of database: 10,201,841
Effective search space: 275449707
Effective search space used: 275449707
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)